View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_8 (Length: 644)
Name: NF19757_low_8
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 39345861 - 39345542
Alignment:
| Q |
19 |
ctacaggtatccaagatgaagtttcagattcaggaaggagcatgtatgcaccaaggcacacacctcctgctaataaagagatgaataaaagacatgttac |
118 |
Q |
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| T |
39345861 |
ctacaggtatccaagatgaagtttcagattcaggaaggagcatgtatgcaccaaggcacacacctcctgctaataaagagatgaataaaagacatgttac |
39345762 |
T |
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| Q |
119 |
aagccatatgaacgcgcggccagaactaggatccgacacaggcatttgtttgtatcaaaacataaggtgtaggaattttgaataatagagattaaataaa |
218 |
Q |
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| T |
39345761 |
aagccatatgaacgcgcggccagaactaggatccgacacaggcatttgtttgtatcaaaacataaggtgtaggaattttgaataatagagattaaataaa |
39345662 |
T |
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| Q |
219 |
tgaagcttgaatcaagattaatttgtctttatcatcatccattttaaaggtatatttgaatttgaggggttaatgatattggtttggcaaaggatgaaga |
318 |
Q |
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| T |
39345661 |
tgaagcttgaatcaagattaatttgtctttatcatcatccattttaaaggtatatttgaatttgaggggttaatgatattggtttggcaaaggatgaaga |
39345562 |
T |
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| Q |
319 |
aggttccaaatgagggagga |
338 |
Q |
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| T |
39345561 |
aggttccaaatgagggagga |
39345542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 430 - 637
Target Start/End: Complemental strand, 39345449 - 39345242
Alignment:
| Q |
430 |
ttcaaatggtggtggtagacatgttcaaaagtttgttaacctgaaaagggctaatcttaggacagatatacacctataaagacaaagaaagagaaagaga |
529 |
Q |
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| T |
39345449 |
ttcaaatggtggtggtagacatgttcaaaagtttgttaacctgaaaagggctaatcttaggacagatatacacctataaagacaaagaaagagaaagaga |
39345350 |
T |
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| Q |
530 |
agcgttttccatttatggttttgtcaaatcnnnnnnnnnnnntccacatggttgattataagggccatcctcacnnnnnnnntgcccaatatgtcatgct |
629 |
Q |
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| T |
39345349 |
agcgttttccatttatggttttgtcaaatcaaaaaataaaaatccacatggttgattataagggccatcctcacaaaaaaaatgcccaatatgtcatgct |
39345250 |
T |
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| Q |
630 |
tcttctca |
637 |
Q |
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|||||||| |
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| T |
39345249 |
tcttctca |
39345242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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