View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_low_82 (Length: 299)

Name: NF19757_low_82
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_low_82
NF19757_low_82
[»] chr3 (1 HSPs)
chr3 (16-299)||(39940861-39941145)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 299
Target Start/End: Complemental strand, 39941145 - 39940861
Alignment:
Q  16 atcattactaaaagaggagtcacttatatcttcgtcactttcactttcaatggttgctaggtttgtgactgttgttctctctaactcttgttcttgcaag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39941145 atcattactaaaagaggagtcacttatatcttcgtcactttcactttcaatggttgctaggtttgtgaatgttgttctctctaactcttgttcttgcaag 39941046  T
Q  116 ccaattgctaaaacaaaatcggagctaacttcctcaagttcagtgtatggannnnnnncggaagattgttttccctcttcgcgttccattgaagaag-nn 214  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||       
T  39941045 ccaattgctagaacaaaatcagagctaacttcctcaagttcagtgtatggatttttttcggaagattgttttccctcttcacgttccattgaagaagaaa 39940946  T
Q  215 nnnnnggtattacgatacgattgagggaatgagaatagaacacgaccattgaggtatttgaggagatgaacatatagaagcataa 299  Q
         |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39940945 aaaaaggtattacgatacgattgagggaatgagaatagaacacgacccttgaggtatttgaggagatgaacatatagaagcataa 39940861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University