View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_84 (Length: 296)
Name: NF19757_low_84
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 31202672 - 31202382
Alignment:
| Q |
1 |
tgtaaacaagtgtatattatcttatacttattagttgaatgaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202672 |
tgtaaacaagtgtatattatcttatacttattagttgaatgaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccatta |
31202573 |
T |
|
| Q |
101 |
ctattgactattcatttcattaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacc |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202572 |
ctattgacttttcatttcattaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacc |
31202473 |
T |
|
| Q |
201 |
cttacacattcatgcattgatttcatttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcctttgcttct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
31202472 |
cttacacattcatgcattgatttcatttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttct |
31202382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 42 - 291
Target Start/End: Complemental strand, 31222185 - 31221935
Alignment:
| Q |
42 |
aaaagcagaaaaaatgaaagtacacgggcccttacttaaatttt-gtctatttcccattactattgactattcatttcattaagtcatagagtggtatat |
140 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||| ||||| |||||| ||| |
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| T |
31222185 |
aaaagcaggaaaaatgaaagtaaacgggcccttacttaaatttttgtctatttcgcattactatcgacttttcatttcattaactcataaagtggtctat |
31222086 |
T |
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| Q |
141 |
tttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcatttattccattcact |
240 |
Q |
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| T |
31222085 |
tttccatatatctctttccaggaacgcatctcttgctacaattaattgcttaatataacccttacacattcatggattgatttcatttattccattcact |
31221986 |
T |
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| Q |
241 |
tgtttcaaatatgaagcttatcatgaacacgtctttgcatcctttgcttct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
31221985 |
tgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttct |
31221935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 31183650 - 31183356
Alignment:
| Q |
1 |
tgtaaacaagtgtatattatcttatact---tattagttgaatgaaaa-gcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttccc |
96 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31183650 |
tgtaaacaagtgtatattatcttatactacgtactagttgaatgaaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcac |
31183551 |
T |
|
| Q |
97 |
attactattgactattcatttcattaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatat |
196 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |
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| T |
31183550 |
attactattgacttttcatttcattaagtcatagagtggtctattttccatatatctctttccgggaacgtatctcatgctacaa-taattgcttaatat |
31183452 |
T |
|
| Q |
197 |
aacccttacacattcatgcattgatttca-tttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcctttgcttct |
291 |
Q |
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||||||||||| |||| || |||||||| ||| || ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |
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| T |
31183451 |
aacccttacactttcaaccactgatttcattttctttcattcacttgtttcaaatatgaagcctatcatgaacaagtctttgcatcttttgtttct |
31183356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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