View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_88 (Length: 283)
Name: NF19757_low_88
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 48717948 - 48718084
Alignment:
| Q |
11 |
cagagaacacaaaaacatgggtagcattgaagtggcagagagaacaacagtaggattagctgcaaaagacccttccggaattctcactccatacacatac |
110 |
Q |
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| T |
48717948 |
cagagaacacaaaaacatgggtagcattgaagtggcagagagaacaacagtaggattagctgcaaaagacccttccggaattctcactccatacacatac |
48718047 |
T |
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| Q |
111 |
actctcaggtgattattgtgtaaataaacgtcatctg |
147 |
Q |
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| T |
48718048 |
actctcaggtgattattgtgtaaataaacgtcatctg |
48718084 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 48718141 - 48718205
Alignment:
| Q |
219 |
aaaaccatgcagaaacacaggaccggatgatgtttacatcataattcattactgtggagtctgcc |
283 |
Q |
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| T |
48718141 |
aaaaccatgcagaaacacaggaccggatgatgtttacatcaaaattcattactgtggagtctgcc |
48718205 |
T |
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