View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_92 (Length: 276)
Name: NF19757_low_92
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 637608 - 637724
Alignment:
| Q |
9 |
acaagctatgaacaaaaatgaaacaaaaacttcattgaatcaacacag--ctaaattgaagcaaaactagacttacacttgttgtgattgcaaggccctc |
106 |
Q |
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| T |
637608 |
acaaggtatgaataaaaatgaaacaaaaactgaattgaatcaacacaaaactaaattgaagcaaaattagacttacatttgttgtgattgtaaggccctt |
637707 |
T |
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| Q |
107 |
ttgaacacttcacctga |
123 |
Q |
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| T |
637708 |
ttgaacacttcacctga |
637724 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 52610584 - 52610544
Alignment:
| Q |
219 |
aaataatgtcctgattcaaaaatccgaaaatgagtatacaa |
259 |
Q |
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| T |
52610584 |
aaataatgtccttattcaaaaatccgaaaatgagtatacaa |
52610544 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 11236384 - 11236344
Alignment:
| Q |
219 |
aaataatgtcctgattcaaaaatccgaaaatgagtatacaa |
259 |
Q |
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| T |
11236384 |
aaataatgtcctggttcaaaaatccgaaaatgcgtatacaa |
11236344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 23482554 - 23482594
Alignment:
| Q |
219 |
aaataatgtcctgattcaaaaatccgaaaatgagtatacaa |
259 |
Q |
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| T |
23482554 |
aaataatgtcctggttcaaaaatccgaaaatgcgtctacaa |
23482594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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