View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19757_low_95 (Length: 266)
Name: NF19757_low_95
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19757_low_95 |
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| [»] scaffold0606 (2 HSPs) |
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Alignment Details
Target: scaffold0606 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 6171 - 6397
Alignment:
| Q |
9 |
gagaagaatcatttataaccactagatcagaatttatgatagagattaaaagctcatatttagtgaaacatgtggtatcttttccaataaaaatgcagcc |
108 |
Q |
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| T |
6171 |
gagaagaatcatttataaccactagatcagaatttacgatagagattaaaagctcatatttagtgaaacatgtggtatcttttccaataaaaatgcagcc |
6270 |
T |
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| Q |
109 |
atgcatattgagtctggtatagtattggaaagaataagcttcaaatattgttcctgtttgttggaagagatggtttctgacagtatggtccgtggaaata |
208 |
Q |
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| T |
6271 |
atgcatattgagtctggtatagtattggaaagaataaacttcaaatattgttcctgtttgttggaagagatggtttctgacaatatggtccgtggaaata |
6370 |
T |
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| Q |
209 |
atttaaaagagacaagttagtatctat |
235 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
6371 |
atttgaaagagacaagttagtatctat |
6397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 266
Target Start/End: Original strand, 6412 - 6442
Alignment:
| Q |
236 |
gctaaattatatcttctttctcaaattacac |
266 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6412 |
gctaaattatatcttctttctcaaattacac |
6442 |
T |
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