View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19757_low_99 (Length: 252)

Name: NF19757_low_99
Description: NF19757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19757_low_99
NF19757_low_99
[»] scaffold1801 (2 HSPs)
scaffold1801 (126-236)||(1-112)
scaffold1801 (61-117)||(2-58)
[»] scaffold1652 (4 HSPs)
scaffold1652 (36-145)||(288-409)
scaffold1652 (91-149)||(277-335)
scaffold1652 (36-77)||(207-248)
scaffold1652 (91-143)||(196-248)
[»] scaffold1176 (3 HSPs)
scaffold1176 (85-145)||(130-190)
scaffold1176 (36-79)||(147-190)
scaffold1176 (101-147)||(68-114)
[»] scaffold0902 (3 HSPs)
scaffold0902 (85-145)||(3466-3526)
scaffold0902 (19-79)||(3466-3526)
scaffold0902 (151-183)||(3494-3526)
[»] scaffold0002 (3 HSPs)
scaffold0002 (85-145)||(165289-165349)
scaffold0002 (101-147)||(165227-165273)
scaffold0002 (19-79)||(165289-165349)
[»] chr6 (7 HSPs)
chr6 (85-145)||(14248377-14248437)
chr6 (101-147)||(14248453-14248499)
chr6 (37-78)||(14351645-14351686)
chr6 (19-79)||(14248377-14248437)
chr6 (36-81)||(14248453-14248498)
chr6 (101-146)||(14317016-14317061)
chr6 (103-144)||(14351645-14351686)
[»] chr4 (4 HSPs)
chr4 (85-130)||(37245129-37245174)
chr4 (90-130)||(37242112-37242152)
chr4 (19-79)||(37245114-37245174)
chr4 (151-183)||(37245142-37245174)


Alignment Details
Target: scaffold1801 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 1 - 112
Alignment:
Q  126 ccatcgcctactatttctcctcttactgtgactcgatcgtcgatctctactcctccatgttcccttgatatttctccctcggctaa-ccaacggcatctg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  1 ccatcgcctactatttctcctcttactgtgactcgatcgtcgatctctactcctccatgttcgcctgatatttctccctcggctaacccaacggcatctg 100  T
Q  225 ctcctgtacctg 236  Q
    ||||||| ||||    
T  101 ctcctgttcctg 112  T

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Target: scaffold1801; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 2 - 58
Alignment:
Q  61 catcgcctacgatttctcctcttactgtgactccattgttgatctctgctcctccat 117  Q
    |||||||||| |||||||||||||||||||||| || || ||||||| |||||||||    
T  2 catcgcctactatttctcctcttactgtgactcgatcgtcgatctctactcctccat 58  T

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Target: scaffold1652 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 288 - 409
Alignment:
Q  36 atctctactcctccatctcaagcatcatcgcctacgatttctcctct------------tactgtgactccattgttgatctctgctcctccatctcaag 123  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||            | |||||||||||| || ||| ||| |||||||||||||||    
T  288 atctctacccctccatctcaagcaccatcgcctacgatttctcctcttgctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaag 387  T
Q  124 caccatcgcctactatttctcc 145  Q
    |||||| |||| | ||||||||    
T  388 caccatagcctgcgatttctcc 409  T

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Target: scaffold1652; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 277 - 335
Alignment:
Q  91 ctccattgttgatctctgctcctccatctcaagcaccatcgcctactatttctcctctt 149  Q
    |||||| || ||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  277 ctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcctctt 335  T

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Target: scaffold1652; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 207 - 248
Alignment:
Q  36 atctctactcctccatctcaagcatcatcgcctacgatttct 77  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  207 atctctactcctccatctcaagtaccatcgcctacgatttct 248  T

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Target: scaffold1652; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 196 - 248
Alignment:
Q  91 ctccattgttgatctctgctcctccatctcaagcaccatcgcctactatttct 143  Q
    |||||| || ||||||| ||||||||||||||| |||||||||||| ||||||    
T  196 ctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatttct 248  T

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Target: scaffold1176 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 130 - 190
Alignment:
Q  85 ctgtgactccattgttgatctctgctcctccatctcaagcaccatcgcctactatttctcc 145  Q
    ||||||||||||  | ||||||| |||||||||||||||||||||||||| | ||||||||    
T  130 ctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctcc 190  T

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Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 147 - 190
Alignment:
Q  36 atctctactcctccatctcaagcatcatcgcctacgatttctcc 79  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  147 atctctactcctccatctcaagcaccatcgcctgcgatttctcc 190  T

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Target: scaffold1176; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 68 - 114
Alignment:
Q  101 gatctctgctcctccatctcaagcaccatcgcctactatttctcctc 147  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||    
T  68 gatctctacccctccatctcaaggaccatcgcctactatttctcctc 114  T

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Target: scaffold0902 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 3526 - 3466
Alignment:
Q  85 ctgtgactccattgttgatctctgctcctccatctcaagcaccatcgcctactatttctcc 145  Q
    |||||||||||| || ||||||| |||||||||||||||||||| ||||| | ||||||||    
T  3526 ctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctcc 3466  T

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Target: scaffold0902; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 3526 - 3466
Alignment:
Q  19 ctgtgactgcattgtgaatctctactcctccatctcaagcatcatcgcctacgatttctcc 79  Q
    |||||||| ||| ||  |||||||||||||||||||||||| || ||||| ||||||||||    
T  3526 ctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctcc 3466  T

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Target: scaffold0902; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 3526 - 3494
Alignment:
Q  151 ctgtgactcgatcgtcgatctctactcctccat 183  Q
    ||||||||| |||||||||||||||||||||||    
T  3526 ctgtgactccatcgtcgatctctactcctccat 3494  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 165289 - 165349
Alignment:
Q  85 ctgtgactccattgttgatctctgctcctccatctcaagcaccatcgcctactatttctcc 145  Q
    |||||||||||| || ||||||| ||||||||||||||| |||||||||| | ||||||||    
T  165289 ctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 165349  T

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Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 165227 - 165273
Alignment:
Q  101 gatctctgctcctccatctcaagcaccatcgcctactatttctcctc 147  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||    
T  165227 gatctctacccctccatctcaaggaccatcgcctactatttctcctc 165273  T

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Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 165289 - 165349
Alignment:
Q  19 ctgtgactgcattgtgaatctctactcctccatctcaagcatcatcgcctacgatttctcc 79  Q
    |||||||| ||| ||  |||||||||||||||||||||| | |||||||| ||||||||||    
T  165289 ctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 165349  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 14248437 - 14248377
Alignment:
Q  85 ctgtgactccattgttgatctctgctcctccatctcaagcaccatcgcctactatttctcc 145  Q
    |||||||||||| || ||||||| ||||||||||||||| |||||||||| | ||||||||    
T  14248437 ctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 14248377  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 14248499 - 14248453
Alignment:
Q  101 gatctctgctcctccatctcaagcaccatcgcctactatttctcctc 147  Q
    ||||||| | ||||||||||||| |||||||||||||||||||||||    
T  14248499 gatctctacccctccatctcaaggaccatcgcctactatttctcctc 14248453  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 14351686 - 14351645
Alignment:
Q  37 tctctactcctccatctcaagcatcatcgcctacgatttctc 78  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  14351686 tctctactccaccatctcaagcaccatcgcctacgatttctc 14351645  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14248437 - 14248377
Alignment:
Q  19 ctgtgactgcattgtgaatctctactcctccatctcaagcatcatcgcctacgatttctcc 79  Q
    |||||||| ||| ||  |||||||||||||||||||||| | |||||||| ||||||||||    
T  14248437 ctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc 14248377  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 14248498 - 14248453
Alignment:
Q  36 atctctactcctccatctcaagcatcatcgcctacgatttctcctc 81  Q
    |||||||| ||||||||||||| | |||||||||| ||||||||||    
T  14248498 atctctacccctccatctcaaggaccatcgcctactatttctcctc 14248453  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 14317061 - 14317016
Alignment:
Q  101 gatctctgctcctccatctcaagcaccatcgcctactatttctcct 146  Q
    ||||||| | || |||||||||| ||||||||||||||||||||||    
T  14317061 gatctctaccccaccatctcaaggaccatcgcctactatttctcct 14317016  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 14351686 - 14351645
Alignment:
Q  103 tctctgctcctccatctcaagcaccatcgcctactatttctc 144  Q
    ||||| |||| ||||||||||||||||||||||| |||||||    
T  14351686 tctctactccaccatctcaagcaccatcgcctacgatttctc 14351645  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 37245174 - 37245129
Alignment:
Q  85 ctgtgactccattgttgatctctgctcctccatctcaagcaccatc 130  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||    
T  37245174 ctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 37242152 - 37242112
Alignment:
Q  90 actccattgttgatctctgctcctccatctcaagcaccatc 130  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  37242152 actccattgtcgatctcaactcctccatctcaagcaccatc 37242112  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 37245174 - 37245114
Alignment:
Q  19 ctgtgactgcattgtgaatctctactcctccatctcaagcatcatcgcctacgatttctcc 79  Q
    |||||||| ||| ||  |||||||||||||||||||||||| |||| ||  ||||||||||    
T  37245174 ctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttctcc 37245114  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 37245174 - 37245142
Alignment:
Q  151 ctgtgactcgatcgtcgatctctactcctccat 183  Q
    ||||||||| |||||||||||||||||||||||    
T  37245174 ctgtgactccatcgtcgatctctactcctccat 37245142  T

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