View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19758_high_1 (Length: 491)
Name: NF19758_high_1
Description: NF19758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19758_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 43857028 - 43857498
Alignment:
| Q |
15 |
tctctctcgattggtgagtctccttctatgggaagataagaatagaaatgctattatgaaaagaactatttggtcatttgaattctaat--gtgnnnnnn |
112 |
Q |
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| T |
43857028 |
tctctttcaattggtgagtctccttctatgggaagataagaatagaaatgctattatcaaaagaactatttggtcatttgaattctaatatgtgtttttt |
43857127 |
T |
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| Q |
113 |
nnccctgcaatattgaatagggttggatttttgagtgctatggcttccaatttgacgaatcaatctcgtaatgttcttagcaaaaacttcatggttaaca |
212 |
Q |
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| T |
43857128 |
ttccctgcaatattgaatagggttggatttttgagtgctatggcttccaatttgacgaatcaatctcgtaatgttcttagcaaaaaactcatggttaaca |
43857227 |
T |
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| Q |
213 |
agtaggtaatactacgatattatgattgatgaacttggttaagagtatcacataatgtgttatgaaactcttgtccaaaatttaatcatgcgatgtttga |
312 |
Q |
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| T |
43857228 |
aggaggtaataatacgatattatgattgatgaacttggttaagagtatcacataatgtgttatgaaactcttgtccaaaatttaatcatgcgatgtttga |
43857327 |
T |
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| Q |
313 |
tattgtgaaaaatcacaaacaaataccactgcttatcgcagttgtgatatgattgcagagaaataaaaaattgacatcgtaggagcataccannnnnnna |
412 |
Q |
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| T |
43857328 |
tattgtgaaaaatcacaaacaaataccactgcttatcgcagttgtgatatgattgcagagaaataaaaaattgacatcgtaggagcataccattttttta |
43857427 |
T |
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| Q |
413 |
gaaccttgcacttatgtttcatttcatattcttatacacaagtattaaataacaataattttgttcttctca |
484 |
Q |
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| T |
43857428 |
gaaccttgcacttatgtttcatttcatattcttatacacaa-tattaaataacaataatttttttcttctca |
43857498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 34911001 - 34911088
Alignment:
| Q |
123 |
tattgaatagggttggatttttgagtgctatggcttccaatttgacgaatcaatctcgtaatgttcttagcaaaaacttcatggttaa |
210 |
Q |
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| T |
34911001 |
tattgaatagggctggatttgcaagtgcaatggcttccaatgtgacaaatcaatcacgtaatgttcttagcaaaaaggtcatggttaa |
34911088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 3011778 - 3011689
Alignment:
| Q |
15 |
tctctctcgattggtgagtct-ccttctatgggaagataagaatagaaatgctattatgaaaagaactatttggtcatttgaattctaat |
103 |
Q |
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| T |
3011778 |
tctctttcaattggtgagtgttccttgtatgggaagagaagaatagaaatgcaattatgaaaagaaccattttgtcaattggattctaat |
3011689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 8767135 - 8767224
Alignment:
| Q |
15 |
tctctctcgattggtgagtct-ccttctatgggaagataagaatagaaatgctattatgaaaagaactatttggtcatttgaattctaat |
103 |
Q |
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| T |
8767135 |
tctctttcaattggtgagtgttccttgtatgggaagagaagaatagaaatgcaattatgaaaagaaccattttgtcaattggattctaat |
8767224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 7563390 - 7563322
Alignment:
| Q |
35 |
tccttctatgggaagataagaatagaaatgctattatgaaaagaactatttggtcatttgaattctaat |
103 |
Q |
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| T |
7563390 |
tccttgtatgggaagagaagtatagaaatgcaattatgaaaagaaccattttgtcaattggattctaat |
7563322 |
T |
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