View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19758_high_2 (Length: 327)
Name: NF19758_high_2
Description: NF19758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19758_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 43856711 - 43857020
Alignment:
| Q |
18 |
acttgtgtccatgaggtgaaagcttagcgattagagtttgaccttgtaactttgaaggacgaagttcaagtcctctccagaaagttcataaaatgatcat |
117 |
Q |
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| T |
43856711 |
acttgtgtccatgaggtgagagcttagcgataagagtttcaccttgtaactttgaaggacgaagttcaagtcctctccagaaagttcataaaatgatcat |
43856810 |
T |
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| Q |
118 |
tagttctgcttcaattaatcaaaatatattatgtatgctaagcttgtacttttgaaggaaaaataaatcatggtgctgcttcaacattcaatacattgtg |
217 |
Q |
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| T |
43856811 |
tagttctgcttcaattaatcaaaatatattatgtatgctaagcttgtaattttgaaggaaaaataaatcatggtgctgcttcaacattcaatacattgtg |
43856910 |
T |
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| Q |
218 |
aattgatatttgcaattttaattccttacttaactttgttacagatgcctacagcatgggtggttgcttcccttgtgccaattgctggtggagtggcgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856911 |
aattgatatttgcaattttaattccttacttaactttgttacagatgcctacagcatgggtggttgcttcccttgtgccaattgctggtggagtggcgct |
43857010 |
T |
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| Q |
318 |
ggcgtctgct |
327 |
Q |
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| T |
43857011 |
ggcgtctgct |
43857020 |
T |
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