View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19758_high_3 (Length: 317)
Name: NF19758_high_3
Description: NF19758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19758_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 51912780 - 51913066
Alignment:
| Q |
19 |
gaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttggaaataaccggtaattagtaataattgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912780 |
gaaatgactcttcattcggtacaccaattagtggtcattcaagctcaataacgtttggaataagacatttggaaataaccggtaattagtaataattgag |
51912879 |
T |
|
| Q |
119 |
aaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgctttttcccc-tggtttactgcacgcgtgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51912880 |
aaggaagtattgttaactttgatgatgtactgcggtagaagttgctactatacagtagtttcttcttttgctttttccccttggtttactgcacgcgtgt |
51912979 |
T |
|
| Q |
218 |
acgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactgactcaagttacgttcatctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51912980 |
acgaaacagaaggaaaagaaagaaataattcacacatgggtgtgctcaatattggaaaccaaaactaactcaagttacgttcatctc |
51913066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University