View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19758_low_7 (Length: 218)
Name: NF19758_low_7
Description: NF19758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19758_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 40578272 - 40578142
Alignment:
| Q |
64 |
ccggaggaatctaaggaagttacaccgccagaaattgtgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggtt |
163 |
Q |
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| T |
40578272 |
ccggaggaatctaaggaagttacaccgcgagaaattgtgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggtt |
40578173 |
T |
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| Q |
164 |
ttccaggtaaagagttttgcttttatttacc |
194 |
Q |
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| T |
40578172 |
ttccaggtaaagagttttgcttttatttacc |
40578142 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 45386718 - 45386659
Alignment:
| Q |
112 |
ttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
171 |
Q |
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| T |
45386718 |
ttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggt |
45386659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 45391107 - 45391028
Alignment:
| Q |
92 |
cagaaattgtgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
171 |
Q |
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| T |
45391107 |
cagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
45391028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 734715 - 734636
Alignment:
| Q |
92 |
cagaaattgtgcttaaagtcttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
171 |
Q |
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| T |
734715 |
cagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggt |
734636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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