View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19759_high_12 (Length: 237)
Name: NF19759_high_12
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 39145653 - 39145441
Alignment:
| Q |
26 |
tagcagcagggaaagtgtggtgtatcattccaaaatgattcattagagccatttgtacgaaggaaaagagaaggagtatatggccgcacacgtatccaat |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39145653 |
tagcagcagggaaagtgtggtgtatcattccaaaatgattcattagagccatttgaacgaaggaaaagagaaggagtatatggccgcacacgtatccaat |
39145554 |
T |
|
| Q |
126 |
gtcggagaccacgagcatatggagg------cggaaaacggagagatgttgtgggagggttgatgcgtaggagaagatgaagcagccaaatgccatgaac |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39145553 |
gtcggagaccacgagcatatggaggcggaggcggaaaacggagagatgttgtgggagggctgatgcgtaggaaaagatgaagcagccaaatgccatgaac |
39145454 |
T |
|
| Q |
220 |
acggagagattaa |
232 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39145453 |
gcggagagattaa |
39145441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University