View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_high_15 (Length: 204)
Name: NF19759_high_15
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 25518579 - 25518404
Alignment:
| Q |
8 |
gcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatgatggt |
107 |
Q |
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| T |
25518579 |
gcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggt |
25518480 |
T |
|
| Q |
108 |
tggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgatcaagcattgatg |
183 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25518479 |
tggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatg |
25518404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 29168347 - 29168175
Alignment:
| Q |
11 |
aagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatgatggttgg |
110 |
Q |
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||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
29168347 |
aagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttgg |
29168248 |
T |
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| Q |
111 |
tgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgatcaagcattgatg |
183 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29168247 |
tgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatg |
29168175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 29568370 - 29568537
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29568370 |
agcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatga |
29568469 |
T |
|
| Q |
104 |
tggttggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgat |
171 |
Q |
| |
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| T |
29568470 |
tagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgat |
29568537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 29569707 - 29569866
Alignment:
| Q |
10 |
gaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatgatggttg |
109 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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| T |
29569707 |
gaagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttg |
29569806 |
T |
|
| Q |
110 |
gtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
169 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569807 |
gtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 27918743 - 27918574
Alignment:
| Q |
10 |
gaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatgatggttg |
109 |
Q |
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||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |||| |
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| T |
27918743 |
gaagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttg |
27918644 |
T |
|
| Q |
110 |
gtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgatcaagcatt |
179 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27918643 |
gtgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatgatcaagcatt |
27918574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 1758247 - 1758081
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
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|||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
1758247 |
agcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtga |
1758148 |
T |
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| Q |
104 |
tggttggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
170 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
1758147 |
tggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatga |
1758081 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 4 - 164
Target Start/End: Complemental strand, 29425395 - 29425232
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||| |||||||||||||||||||| |
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| T |
29425395 |
agcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatga |
29425296 |
T |
|
| Q |
104 |
tggttggtgagcagaagatgatgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
164 |
Q |
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| T |
29425295 |
tggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 27521336 - 27521502
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
| |
|
|||||| ||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
27521336 |
agcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatga |
27521435 |
T |
|
| Q |
104 |
tggttggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
170 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521436 |
tggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
27521502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 27462099 - 27461933
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
27462099 |
agcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatga |
27462000 |
T |
|
| Q |
104 |
tggttggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
170 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27461999 |
tggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatga |
27461933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 27482238 - 27482072
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
| |
|
|||||| ||||||||| || |||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
27482238 |
agcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatga |
27482139 |
T |
|
| Q |
104 |
tggttggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
170 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27482138 |
tggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatga |
27482072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Complemental strand, 18986199 - 18986033
Alignment:
| Q |
4 |
agcggcgaagagcattaccacggagactgaaaggaagtgtgatggcggagaagccattacgggtgacattgcttgcgtcgaaagaatgcttcttggatga |
103 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
18986199 |
agcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatga |
18986100 |
T |
|
| Q |
104 |
tggttggtgagcagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
170 |
Q |
| |
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|||||||||||||| |||||||||||||||| | ||||||||| ||||||||||| |||||||||| |
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| T |
18986099 |
cggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatga |
18986033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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