View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19759_low_1 (Length: 877)

Name: NF19759_low_1
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19759_low_1
NF19759_low_1
[»] chr4 (4 HSPs)
chr4 (116-859)||(38087752-38088462)
chr4 (19-83)||(38087655-38087719)
chr4 (19-67)||(23870043-23870091)
chr4 (19-49)||(25790459-25790489)
[»] chr7 (2 HSPs)
chr7 (120-268)||(41543497-41543643)
chr7 (19-67)||(33480575-33480623)
[»] chr6 (7 HSPs)
chr6 (120-268)||(7827021-7827167)
chr6 (120-268)||(24909457-24909603)
chr6 (120-268)||(10806326-10806472)
chr6 (19-67)||(12174316-12174364)
chr6 (23-67)||(34969396-34969440)
chr6 (19-62)||(13229303-13229346)
chr6 (20-49)||(33607164-33607193)
[»] chr2 (4 HSPs)
chr2 (120-268)||(44612280-44612426)
chr2 (116-229)||(22605451-22605564)
chr2 (24-67)||(33819219-33819262)
chr2 (17-64)||(38561836-38561883)
[»] chr3 (2 HSPs)
chr3 (127-268)||(546926-547065)
chr3 (116-229)||(2507773-2507889)
[»] chr5 (7 HSPs)
chr5 (120-268)||(40820494-40820640)
chr5 (116-234)||(13392082-13392199)
chr5 (116-228)||(40154346-40154459)
chr5 (452-505)||(14514726-14514779)
chr5 (23-67)||(16570581-16570625)
chr5 (19-65)||(7887274-7887320)
chr5 (19-65)||(12263735-12263781)
[»] scaffold0059 (2 HSPs)
scaffold0059 (116-234)||(6654-6772)
scaffold0059 (116-210)||(632-726)
[»] scaffold0013 (1 HSPs)
scaffold0013 (116-234)||(238628-238746)
[»] chr8 (6 HSPs)
chr8 (19-67)||(26835679-26835727)
chr8 (19-67)||(4350756-4350804)
chr8 (19-67)||(22930317-22930365)
chr8 (19-67)||(28376653-28376701)
chr8 (19-67)||(34142020-34142068)
chr8 (611-648)||(1217147-1217184)
[»] chr1 (1 HSPs)
chr1 (19-67)||(8246805-8246853)
[»] scaffold0531 (1 HSPs)
scaffold0531 (21-67)||(9699-9745)


Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 116 - 859
Target Start/End: Original strand, 38087752 - 38088462
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaaggg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38087752 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaaggg 38087851  T
Q  216 atttaaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagccaccaatctgtggctaagctagaaaatcagatgatgtcaccgtggcc 315  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||                   |||||||||||||||||||||||||||| |||||    
T  38087852 atttaaagatcaaagaaagtgaagaaaataagatgttgttatcgtgg-------------------ctaagctagaaaatcagatgatgtcaccatggcc 38087932  T
Q  316 acgacgagtttgcagcgaggccatggccatgaggcttgccacagcgagcctacaattgagtcacaacgaaacaagtcagagatcatggaaatcttgcaaa 415  Q
    ||||||||  |||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  38087933 acgacgagcctgcagcgaggccatggccatgaggctcgccacaacgagcctgcaatggagtcacaacgaaacaagtcatagatcatggaaatcctgcaaa 38088032  T
Q  416 attgtgtgtggctgagcgagcctgggcgtcgccatggcgagcaaaggcggttttgacagctccaatgttgatgtggcagaaacccacccatcgatgaaga 515  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     | ||||||    
T  38088033 attgtgtgtggctaagcgatcctgggcgtcgccatggcgagcaaaggcggttttgacagctccaatgttgatgtggcagaaatccac----tggtgaaga 38088128  T
Q  516 aagcttcgctcaccacggcaagcctgggtgtgactaagttacggtgcaattttttagaaagtatataaacagccccaaacctcagaacaagtggaattat 615  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  38088129 aagcttcgctcaccacggtgagcctgggtgtgactaagttacggtgcaatttttcagaaagtatataaatagccccaaacctcagaacaagtggaattat 38088228  T
Q  616 gtcattgttagggagaggaaaacaaagaaacatgcatagagatagagggaccctaaaaacaaagtgtagtataaatgattttttagattaagagcttact 715  Q
    |||||| ||||||||||||||||| ||||||          |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  38088229 gtcatttttagggagaggaaaacagagaaac----------atagagagaccctaaaaacaaagcgtagtataaatgattttttagattaagagtttact 38088318  T
Q  716 cacaaagannnnnnnatggaaacttactcacaaagatactcattatttttcgcaaagaaaatgataaaacaaatgaaaatagaaaccttaa-ccataacc 814  Q
    ||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||  ||    
T  38088319 cacaaaga-ttttttatggaaacttactcacaaagatactcattattattcgcaaagaaaatgataaaacaaatgaaaaaagaaacctcaacccatggcc 38088417  T
Q  815 ataaagaataattaaatgggtgtttgtgcacatagttgtcgttgt 859  Q
      |||||||||||||| ||||||||||||||||||||||||||||    
T  38088418 gaaaagaataattaaacgggtgtttgtgcacatagttgtcgttgt 38088462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 38087655 - 38087719
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatatgataagagttaaatac 83  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  38087655 gcaccaaaattattatttttacttaatagttagtacaatatagatatatgataagagttaaatac 38087719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23870043 - 23870091
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  23870043 gcaccaaaattattatttttacttagtagttagtactatatagatatat 23870091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 25790459 - 25790489
Alignment:
Q  19 gcaccaaaattattatttttatttaatagtt 49  Q
    |||||||||||||||||||||||||||||||    
T  25790459 gcaccaaaattattatttttatttaatagtt 25790489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 41543643 - 41543497
Alignment:
Q  120 ttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggattt 219  Q
    ||||||||||||||||||||||||||||||| |||   | |||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||       
T  41543643 ttatctcatgaaaagctccaaaataatagattaataccactttatgctttttatgtttaataccaaccaattatgtagggatttgcttgccaagaga--a 41543546  T
Q  220 aaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  41543545 aaagatcaaagaaagtgaagaaaattagatgttgtcatcgtggctaagc 41543497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 33480623 - 33480575
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    |||||||||||||||||||||| |||||||| |||| | ||||||||||    
T  33480623 gcaccaaaattattatttttatgtaatagttagtactacatagatatat 33480575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 1e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 7827167 - 7827021
Alignment:
Q  120 ttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggattt 219  Q
    ||||||||||||||||||||||||||||||| |||   | |||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||       
T  7827167 ttatctcatgaaaagctccaaaataatagattaataccactttatgctttttatgtttaataccaaccaattatgtagggatttgcttgccaagaga--a 7827070  T
Q  220 aaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  7827069 aaagatcaaagaaagtgaagaaaattagatgttgtcatcgtggctaagc 7827021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 24909603 - 24909457
Alignment:
Q  120 ttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggattt 219  Q
    ||||||||||||||||||||||||||||||| |||   | |||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||       
T  24909603 ttatctcatgaaaagctccaaaataatagattaatactactttatgctttttatgtttaataccaaccaattatgtagggatttgcttgccaagaga--a 24909506  T
Q  220 aaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  24909505 aaagatcaaagaaagtgaagaaaattagatgttgtcatcgtggctaagc 24909457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 120 - 268
Target Start/End: Original strand, 10806326 - 10806472
Alignment:
Q  120 ttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggattt 219  Q
    |||||||||||||| |||||||||||||||| | |   | |||||||||||||||| ||||||||||||| |||||||| |||||||| ||||  ||       
T  10806326 ttatctcatgaaaatctccaaaataatagattagtactactttatgctttttatgtttaataccaaccaattatgtagggatttgcttaccaaaaga--a 10806423  T
Q  220 aaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  10806424 aaagatcaaagaaagtgaagaaaattagatgttgtcatcgtggctaagc 10806472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 12174316 - 12174364
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  12174316 gcaccaaaattattatttttacttagtagttagtactatatagatatat 12174364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 34969396 - 34969440
Alignment:
Q  23 caaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  34969396 caaaattattatttttacttagtagttggtactatatagatatat 34969440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 13229303 - 13229346
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatataga 62  Q
    ||||||||||||||||||||| ||| |||| |||||||||||||    
T  13229303 gcaccaaaattattatttttacttagtagtcggtacaatataga 13229346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 33607193 - 33607164
Alignment:
Q  20 caccaaaattattatttttatttaatagtt 49  Q
    ||||||||||||||||||||||||||||||    
T  33607193 caccaaaattattatttttatttaatagtt 33607164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 44612426 - 44612280
Alignment:
Q  120 ttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggattt 219  Q
    ||||||||||||||||||||||||||||||| |||   | |||||||||||||||| ||||||||||||| |||||||| |||||||||||||| ||       
T  44612426 ttatctcatgaaaagctccaaaataatagattaataccactttatgctttttatgtttaataccaaccaattatgtagggatttgcttgccaagaga--a 44612329  T
Q  220 aaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  44612328 aaagatcaaagaaagtgaagaaaattagatgttgtcatcgtggctaagc 44612280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 22605564 - 22605451
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaaggg 215  Q
    |||||||||| |||||||||||||||||||||||||||||  | ||| || | ||||||||||||| ||||||  ||||||||||||| || ||||||||    
T  22605564 caagttatctaatgaaaagctccaaaataatagataaatgctactttttgttatttatgtctaatatcaaccatttatgtaggaatttactggccaaggg 22605465  T
Q  216 atttaaagatcaaa 229  Q
    | ||||||||||||    
T  22605464 acttaaagatcaaa 22605451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 33819262 - 33819219
Alignment:
Q  24 aaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||    
T  33819262 aaaattattatttttatttaaaagttggtactacatagatatat 33819219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 38561836 - 38561883
Alignment:
Q  17 gagcaccaaaattattatttttatttaatagttggtacaatatagata 64  Q
    ||||||| ||||||||||||||||||| |||||  |||||||||||||    
T  38561836 gagcaccgaaattattatttttatttagtagttattacaatatagata 38561883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 547065 - 546926
Alignment:
Q  127 atgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggatttaaagatc 226  Q
    ||||||||||||||||||||||||||||   | |||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||   |||||||    
T  547065 atgaaaagctccaaaataatagataaatactactttatgctttttatgtctaataccaaccaattatgtagggatttgcttgccaagaga--aaaagatc 546968  T
Q  227 aaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    |||||||||||||||||| | ||| ||| |||||||||||||    
T  546967 aaagaaagtgaagaaaattagatgctgtcatcgtggctaagc 546926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 2507773 - 2507889
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataata-gataaatggaattttatgctttt-tatgtctaataccaaccaagtatgtaggaatttgc-ttgccaa 212  Q
    ||||||||||||| ||||||||||||| || | | ||||||  | |||||| |||| |||||||||||| |||||  ||||||||||||| | |||||||    
T  2507773 caagttatctcatcaaaagctccaaaaaaaaaaggtaaatgctactttatgtttttttatgtctaatacaaaccatttatgtaggaatttactttgccaa 2507872  T
Q  213 gggatttaaagatcaaa 229  Q
    |||| ||||||||||||    
T  2507873 gggacttaaagatcaaa 2507889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 120 - 268
Target Start/End: Original strand, 40820494 - 40820640
Alignment:
Q  120 ttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagggattt 219  Q
    ||||||||||||||||||||||||||||||| |||   | |||||||||||||||| ||||||||||||| |||||||| |||||||||||||  ||       
T  40820494 ttatctcatgaaaagctccaaaataatagattaatactactttatgctttttatgtttaataccaaccaattatgtagggatttgcttgccaataga--a 40820591  T
Q  220 aaagatcaaagaaagtgaagaaaatcatatgttgttatcgtggctaagc 268  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||||||||    
T  40820592 aaagatcaaagaaagtgaagaaaattagatgttgtcatcttggctaagc 40820640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 13392199 - 13392082
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaaggg 215  Q
    |||| ||||||||||||||||| |||||| |  |||| |  ||||||||||||||||| ||| |||||||||   | |||||||| |||||||||||||     
T  13392199 caagatatctcatgaaaagctc-aaaatattgaataatttcaattttatgctttttatatcttataccaaccttttgtgtaggaaattgcttgccaaggc 13392101  T
Q  216 atttaaagatcaaagaaag 234  Q
    ||||||||| |||||||||    
T  13392100 atttaaagagcaaagaaag 13392082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 40154459 - 40154346
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatg-ctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaagg 214  Q
    |||||||||||||||||||||||||||||||||| ||||     ||| ||  |||||||||||||||||||| |  ||||||||||||| |||| |||      
T  40154459 caagttatctcatgaaaagctccaaaataatagagaaatactcatttgtgtttttttatgtctaataccaactatttatgtaggaatttacttgtcaata 40154360  T
Q  215 gatttaaagatcaa 228  Q
    || |||||||||||    
T  40154359 gacttaaagatcaa 40154346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 14514726 - 14514779
Alignment:
Q  452 gcgagcaaaggcggttttgacagctccaatgttgatgtggcagaaacccaccca 505  Q
    |||||| |||||||||||||||||| || || || |||||||||||||||||||    
T  14514726 gcgagctaaggcggttttgacagcttcagtgctggtgtggcagaaacccaccca 14514779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 16570625 - 16570581
Alignment:
Q  23 caaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||    
T  16570625 caaaattattatttttacttattagttggtaccatatagatatat 16570581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 7887320 - 7887274
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatat 65  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||||||    
T  7887320 gcaccaaaattattatttttacttagtagttagtactatatagatat 7887274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 12263781 - 12263735
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatat 65  Q
    ||||||||||||||||||||| ||||| ||| |||| ||||||||||    
T  12263781 gcaccaaaattattatttttacttaatggttagtactatatagatat 12263735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 6772 - 6654
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaaggg 215  Q
    |||||||||||||||||| || |||| |||||||| ||||  | ||||||| ||||||| |||||||||||||  |||| || ||||| |||||||||||    
T  6772 caagttatctcatgaaaaacttcaaattaatagatcaatgctactttatgccttttatgactaataccaaccatttatgaagaaatttacttgccaaggg 6673  T
Q  216 atttaaagatcaaagaaag 234  Q
    | |||| ||||| ||||||    
T  6672 acttaatgatcatagaaag 6654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 726 - 632
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgcc 210  Q
    |||||||||||||||||| || |||| |||||||||||||  | ||||||| ||||||||||||||||| |||  |||| || ||||| ||||||    
T  726 caagttatctcatgaaaaacttcaaattaatagataaatgctactttatgccttttatgtctaataccagccatttatgaagaaatttacttgcc 632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 238628 - 238746
Alignment:
Q  116 caagttatctcatgaaaagctccaaaataatagataaatggaattttatgctttttatgtctaataccaaccaagtatgtaggaatttgcttgccaaggg 215  Q
    |||||||||||||||||| || |||| |||||||| ||||  | ||||||| ||||||| |||||||||||||  |||| || ||||| |||||||||||    
T  238628 caagttatctcatgaaaaacttcaaattaatagatcaatgctactttatgccttttatgactaataccaaccatttatgaagaaatttacttgccaaggg 238727  T
Q  216 atttaaagatcaaagaaag 234  Q
    | |||| ||||| ||||||    
T  238728 acttaatgatcatagaaag 238746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 26835727 - 26835679
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  26835727 gcaccaaaattattatttttacttaatagttagtacaatataaatatat 26835679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4350804 - 4350756
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||||||| ||||| |||  ||||||||||||    
T  4350804 gcaccaaaattattatttttatttagtagttagtattatatagatatat 4350756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 22930317 - 22930365
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||| ||||||| ||||||||| |||| ||||||||||||    
T  22930317 gcaccaaaattataatttttacttaatagttagtactatatagatatat 22930365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 28376653 - 28376701
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  28376653 gcaccaaaattattatttttacttagtagttagtactatatagatatat 28376701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 34142020 - 34142068
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||||||||||    
T  34142020 gcaccaaaactattatttttatttagtagttagtactatatagatatat 34142068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 648
Target Start/End: Complemental strand, 1217184 - 1217147
Alignment:
Q  611 attatgtcattgttagggagaggaaaacaaagaaacat 648  Q
    ||||||||||| || |||||||||||||||||||||||    
T  1217184 attatgtcattttttgggagaggaaaacaaagaaacat 1217147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 8246853 - 8246805
Alignment:
Q  19 gcaccaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  8246853 gcaccaaaattattatttttacttaatagttagtactatatagatatat 8246805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 9699 - 9745
Alignment:
Q  21 accaaaattattatttttatttaatagttggtacaatatagatatat 67  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||    
T  9699 accaaaattattatttttatttagtagttagtactatatagatatat 9745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University