View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_11 (Length: 371)
Name: NF19759_low_11
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 43463790 - 43463610
Alignment:
| Q |
11 |
aagaatattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagc |
110 |
Q |
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| T |
43463790 |
aagaagattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagc |
43463691 |
T |
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| Q |
111 |
ggtaaatgtgtaattttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactag |
191 |
Q |
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| T |
43463690 |
ggtaaatgtgtaattttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactag |
43463610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 43455069 - 43454887
Alignment:
| Q |
11 |
aagaatattggaaaatcatcattcacaatatggtaataaaagttaatgttctgtataattaaacaattaatgcggtaagtttagtgattaaaaatcaagc |
110 |
Q |
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| T |
43455069 |
aagaagattggaacatcatcattcacaatttagtaacaaaaattcatgttctgcataattaaacaattaatgcgacagatttagtgatgaaaaatcaagc |
43454970 |
T |
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| Q |
111 |
ggtaaatgtgta---attttttctctcttaaaaacaactgtaatagctgaagatgcaacaaccataaacaataaaaaacactag |
191 |
Q |
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| T |
43454969 |
gctaaatgtttatttattttttct-tcttaaaaacaattgcaatagctgaagatgcaacaaccataaacaataaaaagcactag |
43454887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 43463504 - 43463445
Alignment:
| Q |
297 |
gagtggtgaaacttacttagagcttcatgtgctgtaattcgtgttttaggatctctatca |
356 |
Q |
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| T |
43463504 |
gagtggtgaaacttacttagagcttcatgtgctgtaattcgtgttttaggatctctatca |
43463445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 43454788 - 43454729
Alignment:
| Q |
297 |
gagtggtgaaacttacttagagcttcatgtgctgtaattcgtgttttaggatctctatca |
356 |
Q |
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|||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
43454788 |
gagtagtgaaacttacttagaacttcatgagctttaattcgtgttttaggatctctatca |
43454729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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