View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_13 (Length: 289)
Name: NF19759_low_13
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 24547500 - 24547239
Alignment:
| Q |
18 |
acttctcgtgttcatattccctagcattgaagcccacaatggcaggttcaccgtaaaattaattccaagaaactcttcccaggttttgttcaatcgaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24547500 |
acttctcgtgttcatattccctagcattgaagcccacaatggcaggttcaccgtaaaattaattccaagaaactcttcccaggttttgttcaatcgaatc |
24547401 |
T |
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| Q |
118 |
actgcccaaaccccggtaagtgtccatcattatgattatctcatggaactatcgatcggaactccaccggtaaagacctatgctcaagtagataccggta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24547400 |
actgcccaaaccccggtaagtgtccatcattatgattatctcatggaactctcgatcggaactccaccggtaaagacctatgctcaagtagataccggta |
24547301 |
T |
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| Q |
218 |
gtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactcaaccctatg |
279 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24547300 |
gtgaccttatatggctccaatgcattccttgcactaactgctacaaacaactcaaccctatg |
24547239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 24539996 - 24539850
Alignment:
| Q |
133 |
gtaagtgtccatcattatgattatctcatggaactatcgatcggaactccaccggtaaagacctatgctcaagtagataccggtagtgaccttatatggt |
232 |
Q |
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| T |
24539996 |
gtaagtgcctatgattgtgagtatctcatggaactctccattggaactccgccaataaagatctatgctgaagcagacaccggcagtgaccttgtatggt |
24539897 |
T |
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| Q |
233 |
tccaatgcattccttgcactaactgctacaaacaactcaaccctatg |
279 |
Q |
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| T |
24539896 |
tccaatgcattccttgcaccaaatgctataaacaacaaaaccctatg |
24539850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 15798614 - 15798353
Alignment:
| Q |
18 |
acttctcgtgttcatattccctagcattgaagcccacaatggcaggttcaccgtaaaattaattccaagaaactcttcccaggttttgttcaatcgaatc |
117 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||| ||| ||| |||||||||| | |
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| T |
15798614 |
acttttcgtgttcatattcccacacattgaagcccacaatggcgggttcaccggcaaattgattcctagaaactcttccaaggattttttcaatcgaaac |
15798515 |
T |
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| Q |
118 |
actgcccaaaccccggtaagtgtccatcattatgattatctcatggaactatcgatcggaactccaccggtaaagacctatgctcaagtagataccggta |
217 |
Q |
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||| |||| |||| ||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| |
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| T |
15798514 |
actatccaatcccccgtaagtgccaatcattatgattatctcatggaactctcgatcggtactccaccggtaaagatctatgctcaagcagataccggta |
15798415 |
T |
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| Q |
218 |
gtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactcaaccctatg |
279 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
15798414 |
gtgaccttatatggctccaatgcattccttgcactaactgttacaaacaactaaaccctatg |
15798353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 43059061 - 43058979
Alignment:
| Q |
196 |
tatgctcaagtagataccggtagtgaccttatatggttccaatgcattccttgcactaactgctacaaacaactcaaccctat |
278 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
43059061 |
tatgctcaaatagataccggtagtgaccttacatggttccaatgcattccttgcactaaatactacaaacaactaaaccctat |
43058979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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