View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_14 (Length: 276)
Name: NF19759_low_14
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 31152729 - 31152470
Alignment:
| Q |
7 |
gcagcacagaaggtggaaaatgtgacaatatctcgaaagggtcgcagggattaatattctttaat--------------agtggtgcgaattctttctgt |
92 |
Q |
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| T |
31152729 |
gcagcacaaaaggtggaaaatgtgacaatatctcaaaagggtcgcagggattaatattctttaatggtaccgctaatatagtggtgcgaattctttctgt |
31152630 |
T |
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| Q |
93 |
gttgattttgattaagttaccgctgtgatgattactaatttactactctatttatagagtaattctagtatggtcacgaaaagtactcacttttttaggg |
192 |
Q |
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| T |
31152629 |
gttgattttgattaagttaccgctgtgatgattactaatttactactctatttatagagtaattctagtatggtcccgaaaagtactcacttttttaggg |
31152530 |
T |
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| Q |
193 |
tatttacgtgtatatatctttgaaatacatataactcatgggttccagctatagtaaggc |
252 |
Q |
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| T |
31152529 |
tatttacgtgtatatatctttgaaatacatataactcatgggttccagctatagtaaggc |
31152470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 31153449 - 31153396
Alignment:
| Q |
132 |
ttactactctatttatagagtaattctagtatggtcacgaaaagtactcacttt |
185 |
Q |
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| T |
31153449 |
ttactactctatttataaagtaattctagtatggtcacgagcagtattcacttt |
31153396 |
T |
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