View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_15 (Length: 252)
Name: NF19759_low_15
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 34014563 - 34014354
Alignment:
| Q |
18 |
ttttcaatattagatttattagtgatgcaaacttcatagctagaaagtaagaattaattaaaacattttaaaagaagacgatattcatatnnnnnnntag |
117 |
Q |
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| T |
34014563 |
ttttcaatattagatttattagtgatgcaaacttcatagctagaaagttagaattaattaaaatattttaaaagaaaacgatattcatataaaaaaatag |
34014464 |
T |
|
| Q |
118 |
gaaacgtgaatcaaataccaatatctttaatatgcaatagtacggtgaaagtgaatagataaaataatatagtcacatgcaagatttaagcaatcttgag |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34014463 |
gaaacgtgaatcaaataccaatatctttgatatgcaatagtatggtgaaagtgaataaataaaataatatagtcacatgcaagatttaagcaatcttgag |
34014364 |
T |
|
| Q |
218 |
tgccttttta |
227 |
Q |
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|||||||||| |
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| T |
34014363 |
tgccttttta |
34014354 |
T |
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