View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_19 (Length: 211)
Name: NF19759_low_19
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 1755816 - 1756005
Alignment:
| Q |
15 |
atgaacctcttgacacgcttcttcacaatcttcttggtgagcaatggaacgaccatcttg------cttgaatcgctgcttcagagatgtaagaagcaat |
108 |
Q |
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| T |
1755816 |
atgaacctcttgacacgcttcttcacaatcttcttggtgagcaatggaacggccatcttgtctctgcttgaatcgctgcttcagagatgtaagaagcaat |
1755915 |
T |
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| Q |
109 |
gaggcctatggtaaatgaaatctagatttacaacattcttaatagtagctcaattttatcaatactgtgtttcttctaatttcttctgtg |
198 |
Q |
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| T |
1755916 |
gaggcctatggtaaatgaaatttagatttacaacattcttaatagtagctcaattttatcaatactgtgtttcttctaatttcttctgtg |
1756005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 18704612 - 18704553
Alignment:
| Q |
15 |
atgaacctcttgacacgcttcttcacaatcttcttggtgagcaatggaacgaccatcttg |
74 |
Q |
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| T |
18704612 |
atgaacctcttgacacgcttcttcacaatcttcttggtgagcaatggaacggccatcttg |
18704553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 18703767 - 18703727
Alignment:
| Q |
73 |
tgcttgaatcgctgcttcagagatgtaagaagcaatgaggc |
113 |
Q |
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| T |
18703767 |
tgcttgaatcgctgcttcagatatgtaagaagcaatgaggc |
18703727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 6133813 - 6133730
Alignment:
| Q |
115 |
tatggtaaatgaaatctagatttacaacattcttaatagtagctcaattttatcaatactgtgtttcttctaatttcttctgtg |
198 |
Q |
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| T |
6133813 |
tatggtaaatgaaatttagatttacaacattcttaatagtagctcaattttatcaatactatgtttcttctaatttcttctgtg |
6133730 |
T |
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