View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19759_low_3 (Length: 523)
Name: NF19759_low_3
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 27945537 - 27946031
Alignment:
| Q |
17 |
ggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27945537 |
ggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcaggggacgaaatatctgtggagtggactcaatggtttctac |
27945636 |
T |
|
| Q |
117 |
tgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaaccttcctttcaagacttgttggatatgataatt |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27945637 |
tgtggctgctgctcacactaatactcagtgacagtagtatgttttccatctcata--cttgaaccaaccttcatttcaagacttgttggatatgataatt |
27945734 |
T |
|
| Q |
217 |
caatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgac-atagttta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| || |||||||| |
|
|
| T |
27945735 |
caatggttggccttcctattcctcacaacgaagatgtcttccagcacataatgtctcacttgttgagctcacactattataggagactgatgatagttta |
27945834 |
T |
|
| Q |
316 |
ctgtt-agtagatccattttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgag |
414 |
Q |
| |
|
||||| | || || |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27945835 |
ctgtttactacattcattttgaacttgagatatcttatcaaattttaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgag |
27945934 |
T |
|
| Q |
415 |
aaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgttactatgttagaatgttcactcttc |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27945935 |
aaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgtttctatgttagaatgttcactcttc |
27946031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 27437045 - 27437541
Alignment:
| Q |
17 |
ggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27437045 |
ggatcgttaaaaactcgtggggtgagacctggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctac |
27437144 |
T |
|
| Q |
117 |
tgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaacc-----ttcctttcaagacttgttggatatga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| || ||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
27437145 |
tgtggctgctgctcacactactactcagtgacagtagtatgatttctatctc--atacatgtaccaaccttcatttcatttcaagacttgttgaatatga |
27437242 |
T |
|
| Q |
212 |
taattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacatag |
311 |
Q |
| |
|
| || ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
27437243 |
tcatccaatggttggccttcctattccttgcaccgaagatgtcttccagcacataatgtctcgcttgtaaagctcacactattgttggagactggcatag |
27437342 |
T |
|
| Q |
312 |
tttactgttagtagatccattttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaatttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
27437343 |
tttactgttagtagatccattttgaacatgagacatcttatcaaattgtaaagaccctacagagataggaaatgtaattatcataaaaatgatagatttt |
27437442 |
T |
|
| Q |
412 |
gagaaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgttactatgttagaatgttcactcttc |
511 |
Q |
| |
|
|| | |||||||| |||||||||||||| |||||||||| |||||| ||| ||||| ||||||| | |||||| ||||||| ||| |||||||||| |
|
|
| T |
27437443 |
gactatgcatttttcgtttgatgaataatgacaatgaattcgacttttcaagtagctcctatgttttttgtttgtt-ttatgttaaaattttcactcttc |
27437541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 217 - 503
Target Start/End: Complemental strand, 27549022 - 27548736
Alignment:
| Q |
217 |
caatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacatagtttac |
316 |
Q |
| |
|
||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549022 |
caatggttggcctcactatttcttgcaccgaagatgtcttccagcacataacgtctcgcttgtaaagctcacactattgtaggagaccgacatagtttac |
27548923 |
T |
|
| Q |
317 |
tgttagtagatccattttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27548922 |
tgttagtagatccattttgaacatgagacatcttatcaaattgtaaagaccctacagagattggaaatgtaattatcataagaatgataaattttgagaa |
27548823 |
T |
|
| Q |
417 |
ggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttttgttactatgttagaatgtt |
503 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
27548822 |
tgctttttttgtttgatgaataataacaatgaattatacttttcaagcagctcctatgtttactttttgtttctatgttagaatgtt |
27548736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 27549184 - 27549020
Alignment:
| Q |
17 |
ggatcgttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctac |
116 |
Q |
| |
|
|||| ||||||| ||| ||||| ||||| |||||||| || |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27549184 |
ggattgttaaaagctcctggggcgagacgtggggagaaaatggatactataagatttgtaggggacgaaatatctgtggagtggactcaatggtttctac |
27549085 |
T |
|
| Q |
117 |
tgtggctgctgctcacactactactcagtgacagtagtatgttttccatctcatatacttgaaccaa |
183 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
27549084 |
tgtggctgctgctcaaactacaactcactgactgtagtatgttttccatctc--atacttgaaccaa |
27549020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 26766379 - 26766496
Alignment:
| Q |
23 |
ttaaaaactcgtggggtgagacttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctactgtggc |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||||| || || ||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
26766379 |
ttaaaaactcatggggtgagacttggggagaaaatggatactataaaatatgcaggggacgaaatatctgcggagtggactctatggtttctactgtggc |
26766478 |
T |
|
| Q |
123 |
tgctgctcacactactac |
140 |
Q |
| |
|
||| | ||| |||||||| |
|
|
| T |
26766479 |
tgccgttcatactactac |
26766496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 27503968 - 27504001
Alignment:
| Q |
171 |
atacttgaaccaaccttcctttcaagacttgttg |
204 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
27503968 |
atacttgaaccaaccttcatttcaagacttgttg |
27504001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 278
Target Start/End: Original strand, 27504021 - 27504097
Alignment:
| Q |
202 |
ttggatatgataattcaatggttggccttcctattcctcacaacgaagatgtcttccagcacataacgtctcgcttg |
278 |
Q |
| |
|
||||||||||| || |||||| |||||| | |||||| || ||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
27504021 |
ttggatatgatcatccaatgggtggcctcaccattccttgcaccgaagatgtcttccaacacataacttcttgcttg |
27504097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 7400539 - 7400625
Alignment:
| Q |
45 |
ttggggagagaacggatactacaagatttgcagaggacgaaatatctgtggagtggactcaatggtttctactgtggctgctgctca |
131 |
Q |
| |
|
|||||| ||| | ||||| |||||||| |||||||| |||||| | ||||||||||| || ||||| || ||||| ||||| ||||| |
|
|
| T |
7400539 |
ttggggtgaggaaggatattacaagatctgcagaggccgaaatgtatgtggagtggattccatggtctccactgttgctgcagctca |
7400625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University