View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_5 (Length: 466)
Name: NF19759_low_5
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 39749572 - 39750008
Alignment:
| Q |
11 |
aagaatattgaaacaaagataactaggtagaatcacttacagtcaaagacccaactatagagcaaattccaatataaaccaaaatattagattggccata |
110 |
Q |
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| T |
39749572 |
aagaatattgaaacaaagataactaggtagaatcacttacagtcaaagacccaactatagagcaaattccaatataaaccaaaatattagattggccata |
39749671 |
T |
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| Q |
111 |
gcgaggagcacaatacaaaaccaagaacaatgttatggcaatagcagaggtcgtgtacatgagaaatgctgtaggccnnnnnnngaaagcaataatcagg |
210 |
Q |
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| T |
39749672 |
gcgaggagcacaatacaaaaccaagaacaatgttatggcaatagcagaggtcgtgtacatgagaaatgctgtaggccaaaaaaagaaagcaataatcagg |
39749771 |
T |
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| Q |
211 |
aaaattacatgaatcgtataggctcgggcattatggcacaatagaagaatacctggttgaatggccaatttccatatctgttgtacagaactaagcgaca |
310 |
Q |
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| T |
39749772 |
aaaattacatgaatcgtataggctcgggcattatggcacaatagaagaatacctggttgaatggccaatttccatatctgttgtacagaactaagcgaca |
39749871 |
T |
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| Q |
311 |
tctcttgcggtgcatgcagtacaataatagtagatcctagaatgcatataagacagcccagcatgcccattttctgtagcttttccttcaagaggaaatg |
410 |
Q |
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| T |
39749872 |
tctcttgcggtgcatgcagtacaataatagtagatcctagaatgcatataagacaacccagcatgcccattttctgtagcttttccttcaagaggaaatg |
39749971 |
T |
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| Q |
411 |
tgccaagacagcactagccaattccacagaaattgtt |
447 |
Q |
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| T |
39749972 |
tgccaagacagcactagccaattccacagaaattgtt |
39750008 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 44563331 - 44563416
Alignment:
| Q |
45 |
acttacagtcaaagacccaactatagagcaaattccaatataaaccaaaatattagattggccatagcgaggagcacaatacaaaa |
130 |
Q |
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| T |
44563331 |
acttacagtcaatgatccaattatggagcatattccaatgtaaacgaagatattagtttggccatagcgaggtgcacaatataaaa |
44563416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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