View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19759_low_6 (Length: 451)
Name: NF19759_low_6
Description: NF19759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19759_low_6 |
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| [»] scaffold0102 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 325 - 444
Target Start/End: Original strand, 13840756 - 13840875
Alignment:
| Q |
325 |
caatctaatgcctaaatacattttcaatcaattgggaattggtcaagccaagcctagtgttgtgaatctaaaacttgttgataggtctcttgttcacctt |
424 |
Q |
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| T |
13840756 |
caatctaatgcctaaataaattttcaatcaattgggaattggtcaagccaagcctagtgctgcgaatctaaaacttgttgataggtctcttgttcacctt |
13840855 |
T |
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| Q |
425 |
gaaaaaaggattgatgatgt |
444 |
Q |
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| T |
13840856 |
gaaaaaaggattgatgatgt |
13840875 |
T |
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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 3286235 - 3286356
Alignment:
| Q |
168 |
gtcaaatattttcctcttatccttaatgctagaaagaggaatgac---ataacctcttttatgcaaaccaatgaagaaatactctttgaagcatggggaa |
264 |
Q |
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| T |
3286235 |
gtcaaatattttcctcctgtctttaatgctcgaaagaggaatgacataataacctctttgaggaaaacaaatgaagaaacactctttgaatcatgggaaa |
3286334 |
T |
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| Q |
265 |
gg--taaagatatgttgagaag |
284 |
Q |
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| T |
3286335 |
ggtttaaatatatgttgagaag |
3286356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 3258749 - 3258870
Alignment:
| Q |
168 |
gtcaaatattttcctcttatccttaatgctagaaagaggaatgac---ataacctcttttatgcaaaccaatgaagaaatactctttgaagcatggggaa |
264 |
Q |
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| T |
3258749 |
gtcaaatatcttcctcctgtctttaatgctcgaaaaaggaatgacataataacctctttgaggaaaacaaatgaagaaacactctttgaagaatgtgaaa |
3258848 |
T |
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| Q |
265 |
gg--taaagatatgttgagaag |
284 |
Q |
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| T |
3258849 |
ggtttaaatatatgttgagaag |
3258870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 8265036 - 8264940
Alignment:
| Q |
192 |
aatgctagaaagaggaatgacataacctcttttatgcaaaccaatgaagaaatac--tctttgaagcatggggaagg--taaagatatgttgagaag |
284 |
Q |
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| T |
8265036 |
aatgctcgaaagaggaatgagataaactctttcaggcaaacaaatgaagaaacacagtctttgaaggatgggaaaggtttaaagatctgttgagaag |
8264940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 34684 - 34779
Alignment:
| Q |
332 |
atgcctaaatacattttcaatcaattgggaattggtcaagccaagcctagtgttgtgaatctaaaacttgttgataggtctcttgttcaccttgaa |
427 |
Q |
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| T |
34684 |
atgcctaaatcaattatcaatcaattgggaattggtcaagccaagcctactgctgtgaatttacaactggctgctaggtgtctagttcaccctgaa |
34779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 24128551 - 24128600
Alignment:
| Q |
171 |
aaatattttcctcttatccttaatgctagaaagaggaatgacataacctc |
220 |
Q |
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| T |
24128551 |
aaatactttcctcccatccttaatgctagaaagaggaatgacataacctc |
24128600 |
T |
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