View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_high_1 (Length: 590)
Name: NF1975_high_1
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 3 - 572
Target Start/End: Original strand, 21611579 - 21612148
Alignment:
| Q |
3 |
gagtgagatgaagaagaagaatatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtgga |
102 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21611579 |
gagtgaaaagaagaagaagaatatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtgga |
21611678 |
T |
|
| Q |
103 |
tcctctcttcttttatttgccaatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21611679 |
tcctctcttcttttatttgccaatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggac |
21611778 |
T |
|
| Q |
203 |
gtcttttacgtcattcacattttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgttatagactcttcta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21611779 |
gtcttttacgtcattcacattttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgttatagactcttcta |
21611878 |
T |
|
| Q |
303 |
agatagcatcaaggtacttgcataagggtttcttcttggactttattgctgccctgccccttcctcaggcaagttaatgaagagcgaggttttaactttt |
402 |
Q |
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| T |
21611879 |
agatagcatcaaggtacttgcataagggtttcttcttggactttattgctgccctgccccttcctcaggcaagttaatgaagagcgaggttttaactttt |
21611978 |
T |
|
| Q |
403 |
taacctataatcgacgtcttgtcgcaatctttgacaatgctgctcttttttcatgtttccgacaggtgttaatttggattgtcatacctaatcttggagg |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21611979 |
taacctataatcgacgtcttgtcgcaatctttgacaatgctgctcttttttcatgtttgagacaggtgttaatttggattgtcatacctaatcttggagg |
21612078 |
T |
|
| Q |
503 |
ctcaaccattgcaaacacaaaaaatgtccttaggttcatcatcattatccaatatttgccaaggctattt |
572 |
Q |
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| T |
21612079 |
ctcaaccattgcaaacacaaaaaatgtccttaggttcatcatcattatccaatatttgccaaggctattt |
21612148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 40513662 - 40513397
Alignment:
| Q |
24 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
123 |
Q |
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|||| ||||||||||||||| ||| || | ||||||||||| || || |||||||||||| ||||||||||||||||||| || |||||||||||||| |
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| T |
40513662 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
40513563 |
T |
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| Q |
124 |
aatagttcaagatgaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacatt |
223 |
Q |
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| T |
40513562 |
agtggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatt |
40513463 |
T |
|
| Q |
224 |
ttcatgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
289 |
Q |
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| T |
40513462 |
tgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
40513397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 40482767 - 40482723
Alignment:
| Q |
245 |
tatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
289 |
Q |
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|||||||| |||||||| | ||||||||| ||||||||||||||| |
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| T |
40482767 |
tatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
40482723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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