View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_high_14 (Length: 278)
Name: NF1975_high_14
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 450893 - 450633
Alignment:
| Q |
1 |
gaggagctaaatcacaacaaagaaataaaattaaagactgcaaatcaataaccaagtcaattttgttagcgcagctcacaaagcttgttgaaaaagttag |
100 |
Q |
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| T |
450893 |
gaggagctaaatcacaacaaagaaataaaattaaagactgcaaatcaataatcaagtcaattttgttagcgcagctcacaaagcttgttgaaaaagttag |
450794 |
T |
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| Q |
101 |
ggttttctagggttttgagatttaattggaattgaga-gaataagaagaatagaagaatgatgagaatagagtttatgaaattgtggattcagtaattgg |
199 |
Q |
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| T |
450793 |
ggttttctagggtttt--gatttaattggaattgagaggaataagaagaatagaagaatgaagagaatagagtttatgaaattgtggattcagtaattgg |
450696 |
T |
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| Q |
200 |
tgaatcacacttacaaaagcttatatacatggtaaatgtcaggtggcttaaggaacaagtaat |
262 |
Q |
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| T |
450695 |
tgaatcacacttgcaaaaacttatatacatggtaaatgttaggtagcttaacgaacaagtaat |
450633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 34561096 - 34561291
Alignment:
| Q |
64 |
tgttagcgcagctcacaaagcttgttgaaaaagttagggttttctagggttttgagatttaattggaattgagagaataagaagaatagaagaatgatga |
163 |
Q |
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| T |
34561096 |
tgttagcgcagcttacaatgcttgttccacaaggtagggtttt-tagggttttga--ttttattggaattgagagaataagaagaatagaagaatgagga |
34561192 |
T |
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| Q |
164 |
gaatagagtttatgaaattgtggattcagtaattggtgaatcacacttacaaaagcttatatacatggtaaatgtcaggtggcttaaggaacaagtaat |
262 |
Q |
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| T |
34561193 |
aaatagagtttatgaaattatgaattcattaattggtgaatcacacttacagaagcttataaacatgctaaatgttaggtggcttaaggaacaagtaat |
34561291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 729844 - 729789
Alignment:
| Q |
154 |
agaatgatgagaatagagtttatgaaattgtggattcagtaattggtgaatcacac |
209 |
Q |
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| T |
729844 |
agaatgagaagaatagagtttatgaaattgtgaattcattgattggtgaatcacac |
729789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 22581221 - 22581187
Alignment:
| Q |
119 |
gatttaattggaattgagagaataagaagaataga |
153 |
Q |
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| T |
22581221 |
gatttaatttgaattgagagaataagaagaataga |
22581187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 7678647 - 7678707
Alignment:
| Q |
103 |
ttttctagggttttgagatttaattggaattgagagaataagaagaa--tagaagaatgatga |
163 |
Q |
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| T |
7678647 |
ttttctagggttttga--ttttattgaatttgagagaataagaagaatgtagaagaatgatga |
7678707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 39106312 - 39106228
Alignment:
| Q |
178 |
aaattgtggattcagtaattggtgaatcacacttacaaaagcttatatacatggtaaatgtcaggtggcttaaggaacaagtaat |
262 |
Q |
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| T |
39106312 |
aaattgtgaattcattgattggtgaatcacacttacataggcttatatacatggtaaatgttaggtggcttaaggaacaagtaat |
39106228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 3755538 - 3755579
Alignment:
| Q |
107 |
ctagggttttgagatttaattggaattgagagaataagaagaat |
150 |
Q |
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| T |
3755538 |
ctagggttttga--tttaattggaattgagagaataagaagaat |
3755579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 4664506 - 4664589
Alignment:
| Q |
125 |
attggaattgagagaataagaagaatagaagaatgatgagaatagagttt-atgaaattgtggattcagtaattggtgaatcaca |
208 |
Q |
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| T |
4664506 |
attggatttgagagaatgagaagaataga-gaaggagaagaattgagttttatgaaattgtgaattcattgattggtgaatcaca |
4664589 |
T |
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