View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_high_17 (Length: 250)
Name: NF1975_high_17
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_high_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 6400254 - 6400493
Alignment:
| Q |
16 |
atactagtggagaagtaggatgtgttcaatgaatttgtttggcacattcacatgcta--gttgctataatagtcaaaaaggttttaacatctaaacaagt |
113 |
Q |
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| T |
6400254 |
atactagtggagaagtaggatgtgttcaatgaatttgtttggcacgttcacatgctatagttgctataatagtcaaaaaggttttaacatctaaacaatt |
6400353 |
T |
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| Q |
114 |
ccgtatgtattaaactataggttaaaa----ggatttgtaaaactaggctgtaaccctttcagtggtaaacgttaatcaaaccacatagaggagaaagtc |
209 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6400354 |
acgtatgtattaaactataggttaaaattaagaatttgtaaaactaggctgtaaccctttcagtggtaaacgttaatcaaaccacatagaggagaaagtc |
6400453 |
T |
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| Q |
210 |
aataaacttgaataatattgagagctttacttggatgaact |
250 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
6400454 |
aataaacttgaataatattgagagcttt-cttggatgaact |
6400493 |
T |
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