View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_high_18 (Length: 237)
Name: NF1975_high_18
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45270508 - 45270288
Alignment:
| Q |
1 |
catctgctaccttgatccaaagctctaccatcatcgtgagaaaaggcaattatgataaaaatgaatacaacgtaattgtcgcagacggatcaccgcaggt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45270508 |
catctgccaccttgatccaaagctctaccatcatcgtgagaaaaggcaattatgatcataatgaatacaacgtaattgtcgcagacggatcaccgctggt |
45270409 |
T |
|
| Q |
101 |
gaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
45270408 |
gaatatgaatactggtattgttatccaggactgcaatatcatcccagaagcagcattggtccctgaaaaattcacagttaggtcttacttgggcagacca |
45270309 |
T |
|
| Q |
201 |
tggaagaatgaatcaaaggca |
221 |
Q |
| |
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||| | ||||||||||||||| |
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| T |
45270308 |
tggcaaaatgaatcaaaggca |
45270288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 45273941 - 45273835
Alignment:
| Q |
100 |
tgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagacc |
199 |
Q |
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||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | || |||| |||||||||| ||||||||||||||||||| |
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| T |
45273941 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
45273842 |
T |
|
| Q |
200 |
atggaag |
206 |
Q |
| |
|
||||||| |
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|
| T |
45273841 |
atggaag |
45273835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 45282185 - 45282079
Alignment:
| Q |
100 |
tgaatatgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagacc |
199 |
Q |
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||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | || |||| |||||||||| ||||||||||||||||||| |
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| T |
45282185 |
tgaatttgaatactggtattgtgatccaggattgcaatatcatcccagaagcagcattgttcccagaaagattcacaattcggtcttacttgggcagacc |
45282086 |
T |
|
| Q |
200 |
atggaag |
206 |
Q |
| |
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||||||| |
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|
| T |
45282085 |
atggaag |
45282079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 45293519 - 45293419
Alignment:
| Q |
106 |
tgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaa |
205 |
Q |
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|||||||||||||||| ||||| | ||||||||| |||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
45293519 |
tgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaa |
45293420 |
T |
|
| Q |
206 |
g |
206 |
Q |
| |
|
| |
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|
| T |
45293419 |
g |
45293419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 45302479 - 45302379
Alignment:
| Q |
106 |
tgaatactggtattgttatccaggactgcaatatcgtcccagaagcagcattggtacctgaaaaattcacaattaggtcttacttgggcagaccatggaa |
205 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||| |||||||||||||||||| | ||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
45302479 |
tgaatactggtattgtgatccaaggctgcaatattgtcccagaagcagcattgttccctcaaagattcacaattaaatcttacttgggcagaccatggaa |
45302380 |
T |
|
| Q |
206 |
g |
206 |
Q |
| |
|
| |
|
|
| T |
45302379 |
g |
45302379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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