View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_high_21 (Length: 210)
Name: NF1975_high_21
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 26647094 - 26646911
Alignment:
| Q |
20 |
gggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggtta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26647094 |
gggaaaaggaagatgtaattaaggaagccttggtgcatgaattttttatagatggtgttgtgacatctcctttgctaatggagatattatgcgatggtta |
26646995 |
T |
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| Q |
120 |
tgaatcaatagaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggtgcttgatgatgatgt |
203 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| || || || |||| |||||||||||| ||||||||||||| |
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| T |
26646994 |
tgaatcaataaaggctaacaatactacggataagtttgtcataattgagaaagattgttttgagttggtggttgatgatgatgt |
26646911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 13682689 - 13682805
Alignment:
| Q |
72 |
tggtgttgtgacatctcctttgctaatggagatattatacgatggttatgaatcaatagaggctaacaatactacggataagtttgtcatatttcaggaa |
171 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||||||| |||||| ||||||||||| | | ||||| |
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| T |
13682689 |
tggtgttgtgacatctcctttgctaatggacatattatacaatggttgtaaatcaatagatgctaacaatgctacggctaagtttgtcagaatcaaggaa |
13682788 |
T |
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| Q |
172 |
cattggtttgagttggt |
188 |
Q |
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| T |
13682789 |
aataggtttgagttggt |
13682805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 13669832 - 13669920
Alignment:
| Q |
72 |
tggtgttgtgacatctcctttgctaatggagatattatacgatggttatgaatcaatagaggctaacaatactacggataagtttgtca |
160 |
Q |
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| T |
13669832 |
tggtgttgtgacatctcctttgctaatggacatattatacaatggttgtaaatcaatagatgctaacaatgctacggctaagtttgtca |
13669920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 13689216 - 13689373
Alignment:
| Q |
28 |
gaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggttatgaatcaa |
127 |
Q |
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||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| | ||||| |||||| | |||||| |
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| T |
13689216 |
gaagatgtaattaaggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggaca---tatacaatggttgtaaatcaa |
13689312 |
T |
|
| Q |
128 |
tagaggctaacaatactacggataagtttgtcatatttcaggaacattggtttgagttggt |
188 |
Q |
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|||| ||||||||| |||||| ||||||||||| | | ||||| || ||||||||||||| |
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| T |
13689313 |
tagatgctaacaatgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggt |
13689373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 22188367 - 22188262
Alignment:
| Q |
83 |
catctcctttgctaatggagatattatacgatggttatgaatcaatagaggctaacaatactacggataagtttgtcatatttcaggaacattggtttga |
182 |
Q |
| |
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||||||||||| ||||||| ||||||||| |||||||| |||||||| | ||||||||||||||| |||| |||| | | || ||||| || |||||| |
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| T |
22188367 |
catctcctttgataatggacatattatacaatggttatcaatcaataaatgctaacaatactacgtctaaggttgttagaattgaggaaaataggtttgg |
22188268 |
T |
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| Q |
183 |
gttggt |
188 |
Q |
| |
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|||||| |
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| T |
22188267 |
gttggt |
22188262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 13687264 - 13687342
Alignment:
| Q |
28 |
gaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatat |
106 |
Q |
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||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||| |
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| T |
13687264 |
gaagatgtaattaaggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggacatat |
13687342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 36992220 - 36992080
Alignment:
| Q |
20 |
gggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggtta |
119 |
Q |
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||||||| |||||||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36992220 |
gggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatggtta |
36992121 |
T |
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| Q |
120 |
tgaatcaatagaggctaacaatactacggataagtttgtca |
160 |
Q |
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| |||||||| | ||| |||||||||||| ||||||||||| |
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| T |
36992120 |
tcaatcaataaatgctgacaatactacggctaagtttgtca |
36992080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 37001937 - 37001797
Alignment:
| Q |
20 |
gggaaaaggaagatgtaattaaggaagccttggtgcatcaannnnnnnnagatggtgttgtgacatctcctttgctaatggagatattatacgatggtta |
119 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37001937 |
gggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatggtta |
37001838 |
T |
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| Q |
120 |
tgaatcaatagaggctaacaatactacggataagtttgtca |
160 |
Q |
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| |||||||| | ||| |||||||||||| ||||||||||| |
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| T |
37001837 |
tcaatcaataaatgctgacaatactacggctaagtttgtca |
37001797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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