View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_high_9 (Length: 355)
Name: NF1975_high_9
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_high_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 4932720 - 4933074
Alignment:
| Q |
1 |
tgaaaatatatgaaactgaaatgattataattacacctctaatataaattatagagcataatgacatacacatacaagcaagaagatatgatgagagact |
100 |
Q |
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| T |
4932720 |
tgaaaatatatgaaactaaaatgattataattacacctctaatataaattatagagcataatgacatacacatataagcaagaagatatgatgagagact |
4932819 |
T |
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| Q |
101 |
cacataggaaattgaaatgaatggttgctcatatcgctttcgactgaacggtacgagacattcgtcgcataattcttaggttcttcactaggaaccgcca |
200 |
Q |
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| T |
4932820 |
cacataggaaattgaaatgaatggttgctcatatcgctttcgactgaacggtacgagacattggtcgcataattcttaggttcttcactaggaaccacca |
4932919 |
T |
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| Q |
201 |
ccgctttattacgatcttcatgaattttttccaatgtatttgtattgacatttgtcgatgttttggttttatcatggtcatcgtccttcaaaactaaatc |
300 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4932920 |
ccgctttattatgatcttcatgaattttgtccaatgtatttgtattgacatttgtcgatgttttggttttatcatggtcatcgtccttcaaaactaaatc |
4933019 |
T |
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| Q |
301 |
tattttttgttttgatgttttaatattgtccttccccaaaggcaaatttgtcgtt |
355 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4933020 |
tattttttcttttgatgttttaatattgtccttccccaaaggcaaatttgtcgtt |
4933074 |
T |
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