View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1975_low_10 (Length: 348)

Name: NF1975_low_10
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1975_low_10
NF1975_low_10
[»] chr8 (3 HSPs)
chr8 (112-332)||(26948183-26948406)
chr8 (39-115)||(26947295-26947371)
chr8 (39-115)||(26949618-26949694)
[»] chr7 (2 HSPs)
chr7 (39-115)||(5985197-5985273)
chr7 (39-115)||(8541876-8541952)
[»] scaffold0373 (1 HSPs)
scaffold0373 (43-115)||(14991-15063)
[»] chr4 (1 HSPs)
chr4 (43-115)||(6825210-6825282)
[»] chr6 (1 HSPs)
chr6 (39-118)||(13465288-13465367)
[»] chr5 (2 HSPs)
chr5 (127-187)||(20508014-20508074)
chr5 (71-115)||(20577379-20577423)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 26948183 - 26948406
Alignment:
Q  112 tttcttagtttccaccatcacagtgcctttgcctttagattccacgactgagtcgtttcccagtcgaacctttactttgacagagtaatcgatatccttg 211  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  26948183 tttcttagtttccaccatcacagggcctttgcctttagattccatgactgagtcgtttcccagtcgaacctttactttgacaaagtaatcaatatccttg 26948282  T
Q  212 aagattctctcatctttggccatgtgattgctgcaaccactatccaagtatcaatttctactcaattcgtcattggaatcttgtgtggcat---aaagat 308  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||   ||||||    
T  26948283 aagatgctctcatctttggccatgtgattgctgcaaccactatccaagtaccaatttctactcaattcgttattggaatcttgtgtggcataaaaaagat 26948382  T
Q  309 gttggtcatagtcatgttggtcct 332  Q
    ||||||||||||||||||||||||    
T  26948383 gttggtcatagtcatgttggtcct 26948406  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 26947295 - 26947371
Alignment:
Q  39 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26947295 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatatttctttctagattcttcatgacatttc 26947371  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 26949618 - 26949694
Alignment:
Q  39 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  26949618 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttttagattcttcatgccatttc 26949694  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 5985197 - 5985273
Alignment:
Q  39 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985197 aatgagtacatgcttgcctatttaaagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 5985273  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 8541952 - 8541876
Alignment:
Q  39 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8541952 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctatatagttctttctagattcttcatgacatttc 8541876  T

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Target: scaffold0373 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 14991 - 15063
Alignment:
Q  43 agtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14991 agtacatgcttgcctatttatagtgtggatgtcatattctagatagttctttctagattcttcatgacatttc 15063  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 6825282 - 6825210
Alignment:
Q  43 agtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6825282 agtacatgcttgcctatttatagtgtggatgtcatattctagatagttctttctagattcttcatgacatttc 6825210  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 13465288 - 13465367
Alignment:
Q  39 aatgagtacatgcttgcctatttatagtgtggatgtcatgttctagatagttctttctagattcttcatgacatttctta 118  Q
    |||||||||||| |||||||||||||||||  || |||| |||||||   ||||||||||||||||||||||||||||||    
T  13465288 aatgagtacatgtttgcctatttatagtgtaaatatcatattctagaggcttctttctagattcttcatgacatttctta 13465367  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 20508014 - 20508074
Alignment:
Q  127 catcacagtgcctttgcctttagattccacgactgagtcgtttcccagtcgaacctttact 187  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  20508014 catcatagtgcctttgcctttagattcaacgactgagtcatttcctagtcgaacctttact 20508074  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 20577423 - 20577379
Alignment:
Q  71 atgtcatgttctagatagttctttctagattcttcatgacatttc 115  Q
    |||||||  ||||||||||||||||||| ||| ||||||||||||    
T  20577423 atgtcataatctagatagttctttctaggttcgtcatgacatttc 20577379  T

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