View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1975_low_11 (Length: 341)
Name: NF1975_low_11
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 45380997 - 45381327
Alignment:
| Q |
7 |
ggacatcatcattagcagtagacaccattatttttggcaagaatttctaaactaaaaacatatctagaatcacacacaatgaacacgtctcacattgttc |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45380997 |
ggacatcaacattagcagtagacaccattatttttggcaagaatttctaaactaaaaacatatctagaatcacacacaatgaacacgtctcacattgttc |
45381096 |
T |
|
| Q |
107 |
tattttcgcgtgcaagttaaggatctatatctcgttacttttgctatgttatgaacacaaattctcctcnnnnnnncctatcttaattaatctactccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45381097 |
tattttcgcgtgcaagttaaggatctatatctcgttacttttactatgttatgaacacaaattctcctctttttttcctatcttaattaatctactccta |
45381196 |
T |
|
| Q |
207 |
cctaaataattcaacagttgttacaactgcaaattatacataacactttattcaaggnnnnnnntaatcaatccctcttccacaagaaacatgagctaga |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
45381197 |
cctaaataattcaatagttgttacaactgcaaattatacataacactttattcaaggaaaaaaataatcaatccctcttccacaagaaac--gagctaga |
45381294 |
T |
|
| Q |
307 |
tttatatgtaacatattactttttccacttttcct |
341 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
45381295 |
tttatatgtaac--attactttttccacttttcct |
45381327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University