View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1975_low_12 (Length: 340)
Name: NF1975_low_12
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 292
Target Start/End: Original strand, 1586573 - 1586769
Alignment:
| Q |
96 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586573 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1586672 |
T |
|
| Q |
196 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1586673 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagat |
1586769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 96 - 281
Target Start/End: Original strand, 1580463 - 1580648
Alignment:
| Q |
96 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1580463 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1580562 |
T |
|
| Q |
196 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa |
281 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1580563 |
gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa |
1580648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 96 - 281
Target Start/End: Complemental strand, 1604352 - 1604167
Alignment:
| Q |
96 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604352 |
ctgctatggctaggaagaagatcaatgcattgatgcaaaatatggaaacaatggaagaaaggaaattcaaccctttccctcactttactttgcataatct |
1604253 |
T |
|
| Q |
196 |
gttatcttattattcacctcagctttataccgaacaagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaa |
281 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1604252 |
gttatcttattatgcacctcagctttataccgaaaaagatttagcacaaatagagaaaatcaatcaacatcttcgccaagaaacaa |
1604167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 1586775 - 1586826
Alignment:
| Q |
271 |
ccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaaggagat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1586775 |
ccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagat |
1586826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 1586889 - 1586940
Alignment:
| Q |
271 |
ccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaaggagat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1586889 |
ccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagat |
1586940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 1586804 - 1586856
Alignment:
| Q |
270 |
gccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaaggagat |
322 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1586804 |
gccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagat |
1586856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 1586919 - 1586970
Alignment:
| Q |
271 |
ccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaaggagat |
322 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1586919 |
ccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagat |
1586970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 1591089 - 1591034
Alignment:
| Q |
267 |
tttgccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaaggagat |
322 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1591089 |
tttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagat |
1591034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 1591155 - 1591079
Alignment:
| Q |
231 |
aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaa |
307 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||| | || |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
1591155 |
aagagttagcagaaataaagaaactctatcaacgtgttctccaagaaacaatggaacgagatcatgtttgccaagaa |
1591079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 1587030 - 1587081
Alignment:
| Q |
271 |
ccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaaggagat |
322 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || ||| |||| ||||| |
|
|
| T |
1587030 |
ccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaaagagat |
1587081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 19270950 - 19270865
Alignment:
| Q |
231 |
aagagttagcacaaatacagaaaatcaatcaacatctttgccaagaaacaatggaaggagatcatgttcgccaagaagcaacggaa |
316 |
Q |
| |
|
||||||| ||||||||| ||||| || |||||| | || ||||||||||| |||| |||||||||||||||||||| ||| |||| |
|
|
| T |
19270950 |
aagagttggcacaaataaagaaactctatcaacgtgttctccaagaaacaaaggaacgagatcatgttcgccaagaaacaatggaa |
19270865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University