View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1975_low_13 (Length: 326)

Name: NF1975_low_13
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1975_low_13
NF1975_low_13
[»] chr3 (8 HSPs)
chr3 (12-310)||(16191278-16191585)
chr3 (164-230)||(8821216-8821282)
chr3 (162-208)||(14486957-14487003)
chr3 (162-208)||(14513608-14513654)
chr3 (162-208)||(14513680-14513726)
chr3 (162-208)||(17471540-17471586)
chr3 (164-220)||(8821152-8821208)
chr3 (164-208)||(14487031-14487075)
[»] chr4 (4 HSPs)
chr4 (176-228)||(20634443-20634495)
chr4 (162-208)||(25242834-25242880)
chr4 (165-225)||(44079204-44079264)
chr4 (162-208)||(24826160-24826206)
[»] chr1 (3 HSPs)
chr1 (162-210)||(41087995-41088043)
chr1 (89-208)||(7643994-7644112)
chr1 (166-210)||(41092740-41092784)
[»] chr2 (7 HSPs)
chr2 (157-220)||(28388649-28388712)
chr2 (162-208)||(4109544-4109590)
chr2 (163-208)||(45110106-45110151)
chr2 (162-208)||(4109472-4109518)
chr2 (166-208)||(5168813-5168855)
chr2 (162-208)||(45108344-45108390)
chr2 (164-208)||(45108417-45108461)
[»] scaffold0227 (3 HSPs)
scaffold0227 (162-208)||(20112-20158)
scaffold0227 (151-208)||(20040-20097)
scaffold0227 (162-208)||(20184-20230)
[»] chr7 (4 HSPs)
chr7 (162-208)||(12612428-12612474)
chr7 (162-208)||(17834626-17834672)
chr7 (162-208)||(12599804-12599850)
chr7 (162-208)||(12599948-12599994)
[»] chr5 (1 HSPs)
chr5 (166-231)||(5539162-5539227)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 16191278 - 16191585
Alignment:
Q  12 atcatcaagttgagatatgcacgagttgagttgtcaaagtgttatatagtttatgtggtatggtccttcatacgagcccatagtccaccaagcttcaagc 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  16191278 atcatcaagttgagataggcacgagttgagttgtcaaagtgttatatagtttatgtggtatggtccttcatacgagcccatagtccacagagcttcaagc 16191377  T
Q  112 ttgttaagatgtaggcttttgtccttgatgaggttaacttgtactagtttacagtccaccaa--------acgtcaagtctattaaggcgtagacgtttg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  16191378 ttgttaagatgtaggcttttgtccttgatgaggttaacttgtactagtttacagtccaccaaatgtcaagacgtcaagtctattaaggcgtagacgtttg 16191477  T
Q  204 ttcttcataggatcgacttgtaccagtcgagagatagtagtgtggtatcatgactacaaatgatttaagtaaaatctaaggc-ttgtttaggagttagta 302  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16191478 ttcttcataggatcgacttgtaccagtccagagatagtagtgttgtatcatgactacaaatgatttaagtaaaatctaaggctttgtttaggagttagta 16191577  T
Q  303 gaggaatg 310  Q
    ||||||||    
T  16191578 gaggaatg 16191585  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 8821216 - 8821282
Alignment:
Q  164 agtccaccaaacgtcaagtctattaaggcgtagacgtttgttcttcataggatcgacttgtaccagt 230  Q
    |||||||||||||||||  |  ||||||||||||||||||||||||||||  |||||||| ||||||    
T  8821216 agtccaccaaacgtcaaaccggttaaggcgtagacgtttgttcttcatagagtcgacttgaaccagt 8821282  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 14486957 - 14487003
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||    
T  14486957 acagtccaccaagcgtgaagtctgttaaggcgtagacgtttgttctt 14487003  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 14513608 - 14513654
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  14513608 acagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctt 14513654  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 14513680 - 14513726
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| ||||||||||||| | ||||||||||    
T  14513680 acagtccaccaagcgtcaagcctattaaggcgtataagtttgttctt 14513726  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 17471586 - 17471540
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| |||||||| | |||||| ||||||||||||||||    
T  17471586 acagtccaccaagcgtcaagtatgttaaggtgtagacgtttgttctt 17471540  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 8821152 - 8821208
Alignment:
Q  164 agtccaccaaacgtcaagtctattaaggcgtagacgtttgttcttcataggatcgac 220  Q
    ||||||||||  |||||| ||||||||||||  ||||||||| |||||||| |||||    
T  8821152 agtccaccaagtgtcaagcctattaaggcgtcaacgtttgttattcatagggtcgac 8821208  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 14487031 - 14487075
Alignment:
Q  164 agtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||||| ||| || |||||||||| ||||||||||||    
T  14487031 agtccaccaaacgtgaagcctgttaaggcgtaaacgtttgttctt 14487075  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 20634495 - 20634443
Alignment:
Q  176 gtcaagtctattaaggcgtagacgtttgttcttcataggatcgacttgtacca 228  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||    
T  20634495 gtcaagtctgttaaggcgtagacttttgttcttcataggattgacatgtacca 20634443  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 25242880 - 25242834
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  25242880 acagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctt 25242834  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 44079204 - 44079264
Alignment:
Q  165 gtccaccaaacgtcaagtctattaaggcgtagacgtttgttcttcataggatcgacttgta 225  Q
    ||||||||||||||||| || | ||||| || |||||||||||||||||| | ||||||||    
T  44079204 gtccaccaaacgtcaagcctgtcaaggcatatacgtttgttcttcatagggttgacttgta 44079264  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 24826206 - 24826160
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| |||| || || |||||||||||||||||||||||    
T  24826206 acagtccaccaagcgtctagcctgttaaggcgtagacgtttgttctt 24826160  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 41087995 - 41088043
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttcttca 210  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||    
T  41087995 acagtccaccaaacgtcaagtccgtcaaggcgtagacgtttgttcttca 41088043  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 7644112 - 7643994
Alignment:
Q  89 ccatagtccaccaagcttcaagcttgttaagatgtaggcttttgtccttgatgaggttaacttgtactagtttacagtccaccaaacgtcaagtctatta 188  Q
    |||||||||||||||| |||||| |||||||  |||| | ||||| ||| ||  |||  || | ||| |||  |||||||| |||||||||||| | |||    
T  7644112 ccatagtccaccaagcgtcaagcatgttaaggcgtagacgtttgttctttattcggtcgacctatac-agtccacagtccatcaaacgtcaagtttgtta 7644014  T
Q  189 aggcgtagacgtttgttctt 208  Q
    ||||||||||||||||||||    
T  7644013 aggcgtagacgtttgttctt 7643994  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 41092740 - 41092784
Alignment:
Q  166 tccaccaaacgtcaagtctattaaggcgtagacgtttgttcttca 210  Q
    |||||||||| |||||||  | |||||||||||||||||||||||    
T  41092740 tccaccaaacatcaagtccgtcaaggcgtagacgtttgttcttca 41092784  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 28388712 - 28388649
Alignment:
Q  157 agtttacagtccaccaaacgtcaagtctattaaggcgtagacgtttgttcttcataggatcgac 220  Q
    |||| |||||||||||| |||||||||| | ||| ||||||  |||||||||||||||||||||    
T  28388712 agttcacagtccaccaagcgtcaagtctgtcaagacgtagaaatttgttcttcataggatcgac 28388649  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 4109544 - 4109590
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  4109544 acagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctt 4109590  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 45110106 - 45110151
Alignment:
Q  163 cagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    ||||||||||||||||||| || ||||| |||||||||||||||||    
T  45110106 cagtccaccaaacgtcaagcctgttaagacgtagacgtttgttctt 45110151  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 4109472 - 4109518
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || | |||||||||||||||||||||    
T  4109472 acagtccaccaagcgtcaagcctgtgaaggcgtagacgtttgttctt 4109518  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 5168855 - 5168813
Alignment:
Q  166 tccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||||||| || |||||||||||| ||||||||||    
T  5168855 tccaccaaacgtcaagacttttaaggcgtagatgtttgttctt 5168813  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 45108344 - 45108390
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||| ||||||||||||||||    
T  45108344 acagtccaccaagcgtcaaggctgttaaggtgtagacgtttgttctt 45108390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 45108417 - 45108461
Alignment:
Q  164 agtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||| ||||||| || |||||| ||||||||||||||||    
T  45108417 agtccaccaagcgtcaagcctgttaaggtgtagacgtttgttctt 45108461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 20158 - 20112
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  20158 acagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctt 20112  T

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Target: scaffold0227; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 20097 - 20040
Alignment:
Q  151 tgtactagtttacagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||  |||||||||||| ||||||| || |||||||||| ||||||||||||    
T  20097 tgtactagtccacagtccaccaagcgtcaagcctgttaaggcgtaaacgtttgttctt 20040  T

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Target: scaffold0227; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 20230 - 20184
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| | ||||| || |||||||||||||||||||||||    
T  20230 acagtccaccaagcatcaagcctgttaaggcgtagacgtttgttctt 20184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 12612428 - 12612474
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  12612428 acagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctt 12612474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 17834672 - 17834626
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||    
T  17834672 acagtccaccaagcgtcaagcctgttaaggcgtagacgtttgttctt 17834626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 12599804 - 12599850
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| ||||||| || ||||||| |||||||||||||||    
T  12599804 acagtccaccaagcgtcaagcctgttaaggcatagacgtttgttctt 12599850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 12599948 - 12599994
Alignment:
Q  162 acagtccaccaaacgtcaagtctattaaggcgtagacgtttgttctt 208  Q
    |||||||||||| | ||||| || |||||||||||||||||||||||    
T  12599948 acagtccaccaagcatcaagcctgttaaggcgtagacgtttgttctt 12599994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 5539162 - 5539227
Alignment:
Q  166 tccaccaaacgtcaagtctattaaggcgtagacgtttgttcttcataggatcgacttgtaccagtc 231  Q
    |||||||| || ||||||| ||||  |||||||||||||||||||||  |||||| || |||||||    
T  5539162 tccaccaagcgacaagtctgttaaaacgtagacgtttgttcttcataacatcgacctgaaccagtc 5539227  T

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