View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_15 (Length: 298)
Name: NF1975_low_15
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 26828961 - 26829245
Alignment:
| Q |
1 |
actaaagtgtaatgcagatgtgtcgttctcgttggcgttgaaatgtgtcggattcgttatgtgtattcgagatgcttccaagaactttgttatggctaaa |
100 |
Q |
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| T |
26828961 |
actaaagtgtaatgtagatgtgtcgttctcgttggcgttgaaatgtgtcggattcggtatgtgtattcgcgatgtttccgagaactttattatgactaaa |
26829060 |
T |
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| Q |
101 |
actttgtggtctaatctcgtgttcgtcggacttaggaaaagctatggggttgccgtatactatgcattgggtggggagtctacaactaacaagtgtggat |
200 |
Q |
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| T |
26829061 |
attttgtggtctaatctcgtgttcgtcggacttaggaaaagctatggggttgccgtatactatgcattgggtggggagtctacaactaacaagtgtggat |
26829160 |
T |
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| Q |
201 |
ttcaaattggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatcttcgagtttggagcaattattgatga |
285 |
Q |
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| T |
26829161 |
ttcaaattggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatcttcgagtttggagcaattatcgatga |
26829245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 286
Target Start/End: Original strand, 50857728 - 50857883
Alignment:
| Q |
129 |
gacttaggaaaagctatggggttgccgtatactatgcattgggtggggagtctacaactaacaagtgtggatttcaaattggatgtgccaagaaggttgt |
228 |
Q |
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| T |
50857728 |
gacttaggagaagccatggggctgtcgcatgctatgtattgggtgcagaccctgcaactaagaaatgtagatttcgagctggatg--ccaagaaggttgc |
50857825 |
T |
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| Q |
229 |
agactattacagtaaaggaagtaacgatatcttcgagtttggagcaattattgatgat |
286 |
Q |
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| T |
50857826 |
agattattataatcatggtagttgtgatatctccgagtttggagcaattattgatgat |
50857883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 13925654 - 13925771
Alignment:
| Q |
160 |
ctatgcattgggtggggagtctacaactaacaagtgtggatttcaaattggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatc |
259 |
Q |
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| T |
13925654 |
ctattcattgggtgcgcaatctacaacttacaaatgtggactttgaattagatg--caaagaaggttgtagattattataatagaggaagcaatgacatc |
13925751 |
T |
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| Q |
260 |
ttcgagtttggagcaattat |
279 |
Q |
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| T |
13925752 |
tccgagtttggagcaattat |
13925771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 12204790 - 12204907
Alignment:
| Q |
160 |
ctatgcattgggtggggagtctacaactaacaagtgtggatttcaaattggatgtgccaagaaggttgtagactattacagtaaaggaagtaacgatatc |
259 |
Q |
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| T |
12204790 |
ctattcattgggtgcgcaatctacaacttacaaatgtggactttgaattagatg--caaagaaggttgtagattattataatagaggaagcaatgacatc |
12204887 |
T |
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| Q |
260 |
ttcgagtttggagcaattat |
279 |
Q |
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| T |
12204888 |
tccgagtttggagcaattat |
12204907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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