View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1975_low_17 (Length: 292)
Name: NF1975_low_17
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 205
Target Start/End: Original strand, 28342634 - 28342810
Alignment:
| Q |
29 |
ttaagtcaagaagatgataatttaccaagaagatggtnnnnnnnntgaagagcgaggaaaacgcagagggttgtaggataactcattctataatgtgtat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
28342634 |
ttaagtcaagaagatgataatttaccaagaagatggtaaaaaaaatgaagagcgaagaaaacgcagagggttgtaggataactccttctatagtgtgtat |
28342733 |
T |
|
| Q |
129 |
tctcttgtgaaccaaaatacataattgcaatctctcacggttcaacacaacagtgtaatctcttacagaccaacacc |
205 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28342734 |
tatcttatgaaccaaaatacataattgcaatctctcacggatcaacacaacagtgtaatctcttaccgaccaacacc |
28342810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 28342815 - 28342920
Alignment:
| Q |
182 |
tgtaatctcttacagaccaacacctttactataaaattga----------atactccatttacactaatgcaacaatttacatattaatccagcatatat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28342815 |
tgtaatctcttacagaccaacacctttactataaaattgataagtgtattatactccatttacgctaatgcaacaatttacatattaatccagcatatat |
28342914 |
T |
|
| Q |
272 |
aataaa |
277 |
Q |
| |
|
|||||| |
|
|
| T |
28342915 |
aataaa |
28342920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University