View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_2 (Length: 544)
Name: NF1975_low_2
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 283 - 529
Target Start/End: Complemental strand, 38630404 - 38630158
Alignment:
| Q |
283 |
gtaaattactaatgcaatgtgaataaaagtattatgtatatgatgatttatattcctcacataactcaatgttgttgttcagatagttatgatatgaaac |
382 |
Q |
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| T |
38630404 |
gtaaattactaatgcaatgtgaataaaagtattatgtatatgatgatttatattcctcacataactcaatgttgttgttcagatagttatgatatgaaac |
38630305 |
T |
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| Q |
383 |
ccagctttacacagatcgtggtagtctcatctattgggttgatattggtcatattattgcattatcgactcaaacagattagagatcaaaagatcatccc |
482 |
Q |
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| T |
38630304 |
ccagctttagacagatcgtggtagtctcatctattgggttgatattggtcatattattgcattatcgactcaaacagattagagatcaaaagatcatccc |
38630205 |
T |
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| Q |
483 |
tcgtttaagattatcacgtacaggtcacaccccaaagcttgaaaggt |
529 |
Q |
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| T |
38630204 |
tcgtttaagattatcacgtacaggtcacaccccaaagcttgaaaggt |
38630158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 38630534 - 38630413
Alignment:
| Q |
132 |
ttatatatccttcattgcaccttttgtggtctctggtctttgatttatgggagacatacaaaaaggtaacaaacaaaataactcaaatgtcttcatcatc |
231 |
Q |
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| T |
38630534 |
ttatatatccttcattgcaccttttgtggtctctggtctttgatttatgggagacatacaaaaaggtaacaaacaaaataactcaaatgtcttcatcatc |
38630435 |
T |
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| Q |
232 |
ttcaaattttggctttatctat |
253 |
Q |
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| T |
38630434 |
ttcaaattttggctttatctat |
38630413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 38630652 - 38630569
Alignment:
| Q |
16 |
atgtaactgttaatgtccaacagaaaggccataaaagtgaagaatttccttcatcgatcaactgcataatcacaccttcaaagt |
99 |
Q |
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| T |
38630652 |
atgtaactgttaatgtccaacagaaaggccacaaaagtgaagaatttccttcatcgatcaactgcataatcacaccttcaaagt |
38630569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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