View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_20 (Length: 252)
Name: NF1975_low_20
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 40887909 - 40888146
Alignment:
| Q |
15 |
cagaaccattcctgattatggtacctcgaattaggtactattggggacatcctgataatttaatactttatttccgagtaaatacttaacttgatccttg |
114 |
Q |
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| T |
40887909 |
cagaaccattcctgattatggtacctcgaattaggtactattggggacatcctgataatttaatactttatttccgagtaaatacttaacttgatccttg |
40888008 |
T |
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| Q |
115 |
gaattgtaaggttgtatcaatatattactccgtattatcaatattcaagattccacaatgatacttaaaattgcaaaatgttaataaatttgtccatctg |
214 |
Q |
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| T |
40888009 |
gaattgtaaggttgtatcaatatagtactccgtattatcaatattcaagattccacaatgatacttaaaattgcaaaatgttaataaatttgtccatctg |
40888108 |
T |
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| Q |
215 |
tttgattgtggtattaaaatgcatcactggcattattc |
252 |
Q |
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| T |
40888109 |
tttgattgtggtattaaaatgcatcactggcattattc |
40888146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 44 - 252
Target Start/End: Original strand, 44139168 - 44139377
Alignment:
| Q |
44 |
attaggtactattggggacatcctgataatttaatactttatttccgagtaaatacttaacttgatccttggaattgtaaggttgtatcaatatattact |
143 |
Q |
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| T |
44139168 |
attaggtactattggggacatcctgataatttaatactttatttccgagtaaatacttaacttgatccttggaattgtaaggttgtatcaatatagtact |
44139267 |
T |
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| Q |
144 |
ccgtattatcaatattcaagattccacaatgatacttaaaattgcaaaatgttaat-aaatttgtccatctgtttgattgtggtattaaaatgcatcact |
242 |
Q |
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| T |
44139268 |
ccatattatcaatattcaagattccacaatgatacttgaaattgcaaaatgttaatcaaatttgtccatctgtttgattgtggtattaaaatgcatcact |
44139367 |
T |
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| Q |
243 |
ggcattattc |
252 |
Q |
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| T |
44139368 |
ggcattattc |
44139377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 41734510 - 41734565
Alignment:
| Q |
183 |
aattgcaaaatgttaataaatttgtccatctgtttgattgtggtattaaaatgcat |
238 |
Q |
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| T |
41734510 |
aattgcaaaatgttaataagtttgtccttctgtttgagtttgttatcaaaatgcat |
41734565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 2373768 - 2373836
Alignment:
| Q |
92 |
gtaaatacttaacttgatccttggaattgtaaggttgtatcaatatattactccgtattatcaatattc |
160 |
Q |
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| T |
2373768 |
gtaaatatctaatttgatccttgaaattgtaagattgtatcaatttagttctccacattatcaatattc |
2373836 |
T |
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