View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_24 (Length: 227)
Name: NF1975_low_24
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7024398 - 7024185
Alignment:
| Q |
1 |
gaaggaaaataaaaacgttgggatccgcggggacgggaaaatattcccccgggacggggacggggaacagattcaccggtggggtggggatcgaggaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7024398 |
gaaggaaaataaaaacgttgggatccgcggggatgggaaaatattcccccgggacggggacgggaaacagattcaccggtggggtggggatcgaggaagt |
7024299 |
T |
|
| Q |
101 |
atcccctcgcccccgatccgccccattgacatccctaatccctatatcactagctttcaattgtaatggaatgtggaattaatatttttcctttatgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7024298 |
atcccctcgcccccgatccgccccattgacatccctaatccctatatcactagctttcaattgtaatggaatgtggaattaatatttttcctttatgaat |
7024199 |
T |
|
| Q |
201 |
tattggtctcgttc |
214 |
Q |
| |
|
|||||||||||||| |
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| T |
7024198 |
tattggtctcgttc |
7024185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 13308926 - 13308841
Alignment:
| Q |
51 |
gggacggggacggggaacagattcaccggtggggtggggatcgaggaagtatcccctcgcccccgatccgccccattgacatcccta |
137 |
Q |
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| T |
13308926 |
gggacggggacggggaaccaatacaccggcggggcggggatcggggaagtatcccc-cgcccccgatccgccccattgacatcccta |
13308841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 10657208 - 10657127
Alignment:
| Q |
55 |
cggggacggggaacagattcaccggtggggtggggatcgaggaagtatcccctcgcccccgatccgccccattgacatcccta |
137 |
Q |
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|||||||||| |||| || |||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10657208 |
cggggacgggaaacaaatacaccggcggggcggggatcggggaagtatcccc-cgcccccgatccgccccattgacatcccta |
10657127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 40224913 - 40224812
Alignment:
| Q |
35 |
gggaaaatattcccccgggacgggga-cggggaacagattcaccggtggggtggggatcgaggaagtatcccctcgcccccgatccgccccattgacatc |
133 |
Q |
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||||||||||||||||| ||| |||| |||||||| |||||| |||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||| |
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| T |
40224913 |
gggaaaatattcccccgtgacagggatcggggaacggattcaacggtggggtggggaacgagtaagtatccc--cacccccaatccgccccattgacatc |
40224816 |
T |
|
| Q |
134 |
ccta |
137 |
Q |
| |
|
|||| |
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|
| T |
40224815 |
ccta |
40224812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 44631437 - 44631516
Alignment:
| Q |
56 |
ggggacggggaacagattcaccggtggggtggggatcgaggaagtatcccctcgcccccgatccgccccattgacatcccta |
137 |
Q |
| |
|
|||||||||||| |||||||||| | | |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44631437 |
ggggacggggaatggattcaccggcgaagcggggatcggggaagtatcccc--gcccccgatccgccccattgacatcccta |
44631516 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 36973681 - 36973599
Alignment:
| Q |
55 |
cggggacggggaacagattcaccggtggggtggggatcgaggaagtatcccctcgcccccgatccgccccattgacatccctaa |
138 |
Q |
| |
|
|||||| |||||| |||||||||| |||| ||||||| |||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
36973681 |
cggggatggggaatggattcaccggcggggcggggatcagggaagtatcccc-cgcccccgatccaccccattgacgtccctaa |
36973599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 9899349 - 9899422
Alignment:
| Q |
55 |
cggggacggggaacagattcaccggtggggtggggatcgaggaagtatcccctcgcccccgatccgccccattga |
129 |
Q |
| |
|
|||||||||||||| || |||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||| |
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| T |
9899349 |
cggggacggggaacgaatacaccggcggggcgggaatcggggaagtatcccct-gcccccgatccgccccattga |
9899422 |
T |
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