View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1975_low_25 (Length: 227)

Name: NF1975_low_25
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1975_low_25
NF1975_low_25
[»] chr2 (1 HSPs)
chr2 (1-217)||(25078655-25078871)
[»] chr8 (2 HSPs)
chr8 (13-186)||(3185609-3185786)
chr8 (104-185)||(14242772-14242853)
[»] chr1 (1 HSPs)
chr1 (61-182)||(25009324-25009445)
[»] chr6 (2 HSPs)
chr6 (104-155)||(29659180-29659231)
chr6 (90-156)||(5959763-5959829)
[»] chr5 (1 HSPs)
chr5 (88-183)||(28144337-28144432)
[»] scaffold0123 (1 HSPs)
scaffold0123 (111-183)||(43766-43838)
[»] chr7 (3 HSPs)
chr7 (62-157)||(17759059-17759154)
chr7 (109-154)||(20306494-20306539)
chr7 (109-161)||(38709371-38709423)
[»] chr3 (3 HSPs)
chr3 (51-97)||(28438171-28438217)
chr3 (109-158)||(21894051-21894100)
chr3 (106-155)||(43461146-43461195)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 25078655 - 25078871
Alignment:
Q  1 ttgtaaatacatctcttttgttagcaattttatggactatattgtcagacggaaaacaagtttgaggactaaattgactacttaaagatagattcgatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25078655 ttgtaaatacatctcttttgttagcaattttatggactatattgtcagacggaaaacaagtttgaggactaaatcgactacttaaagatagattcgatga 25078754  T
Q  101 ctgaaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaagaaacaatgtgataacgagttacacttccaatggtcaaaata 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25078755 ctgaaatgactaataaaagagacactcgtggatgtgtttgcaatttcgatacattcaagaaacaatgtgataacgagttacacttccaatgatcaaaata 25078854  T
Q  201 tcggcttgtaagaataa 217  Q
    |||||||||||||||||    
T  25078855 tcggcttgtaagaataa 25078871  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 3185786 - 3185609
Alignment:
Q  13 ctcttttgttagcaattttatggactatattgtcagacggaaaacaagtttgaggactaaattgactacttaaagatagattcgatgactgaaatgacta 112  Q
    ||||| |||||| |||||||||||||| |||| || ||| ||||||  || |||||| |||  |||||| |||| | | ||||||  |||||||||||||    
T  3185786 ctcttctgttagaaattttatggactaaattgacaaacgaaaaacacattcgaggacaaaac-gactacctaaaaacatattcgagaactgaaatgacta 3185688  T
Q  113 ataaaagagacactcgtcgatgtgtttgcaat-----ttcgatacattcaagaaacaatgtgataacgagttacacttc 186  Q
    || ||||||||||| || |||||||||| |||     || |||||||||||| | |||||||| | |||||||||||||    
T  3185687 atgaaagagacacttgtggatgtgtttgtaattttgatttgatacattcaaggaccaatgtgacagcgagttacacttc 3185609  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 14242772 - 14242853
Alignment:
Q  104 aaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaagaaacaatgtgataacgagttacactt 185  Q
    ||||||||||||||||||||||  || ||||||||| || ||| | |||||||| ||| |||||||| | ||||||||||||    
T  14242772 aaatgactaataaaagagacacatgtggatgtgtttacatttttggtacattcaggaaccaatgtgacagcgagttacactt 14242853  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 182
Target Start/End: Original strand, 25009324 - 25009445
Alignment:
Q  61 tttgaggactaaattgactacttaaagatagattcgatgactgaaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaaga 160  Q
    ||||||||||||||||||||| |||| ||| ||| |||||   ||||||||||||||| ||| ||| || |||||||||| ||||| |||||| | || |    
T  25009324 tttgaggactaaattgactacctaaaaatatatttgatgagcaaaatgactaataaaaaagatacttgtagatgtgtttgtaattttgatacaataaaaa 25009423  T
Q  161 aacaatgtgataacgagttaca 182  Q
    | |||||||| || ||||||||    
T  25009424 accaatgtgagaatgagttaca 25009445  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 29659231 - 29659180
Alignment:
Q  104 aaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacatt 155  Q
    ||||||||||||||||||||||| || |||||||||||||||| ||||||||    
T  29659231 aaatgactaataaaagagacactagtggatgtgtttgcaattttgatacatt 29659180  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 5959763 - 5959829
Alignment:
Q  90 agattcgatgactgaaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacattc 156  Q
    |||||||| |||  |||| ||| |||||||||||| | || ||||| ||||||||||||||||||||    
T  5959763 agattcgaggaccaaaataactgataaaagagacatttgtggatgtatttgcaatttcgatacattc 5959829  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 28144337 - 28144432
Alignment:
Q  88 atagattcgatgactgaaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaagaaacaatgtgataacgagttacac 183  Q
    |||||||| | ||| ||||||||| ||||||||||||| ||| |||||||||||||||| ||| |||| | | | ||||||||  |||||||||||    
T  28144337 atagattcaaggaccgaaatgactgataaaagagacacgcgtggatgtgtttgcaattttgattcatttaggtatcaatgtgactacgagttacac 28144432  T

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Target: scaffold0123 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 43766 - 43838
Alignment:
Q  111 taataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaagaaacaatgtgataacgagttacac 183  Q
    |||| ||| ||||||||||  |||||||||||||||||||| ||||||| | |||||||| ||| ||||||||    
T  43766 taattaaaaagacactcgtgaatgtgtttgcaatttcgatagattcaaggaccaatgtgacaaccagttacac 43838  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 17759154 - 17759059
Alignment:
Q  62 ttgaggactaaattgactacttaaagatagattcgatgactgaaatgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacattca 157  Q
    ||||||||||||||||||| ||||| |   |||| |||||  |||| |||||||||| |||||||  |  |||| |||||||||| ||||||||||    
T  17759154 ttgaggactaaattgactatttaaaaacgaattcaatgaccaaaataactaataaaacagacacttatgaatgtctttgcaattttgatacattca 17759059  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 20306539 - 20306494
Alignment:
Q  109 actaataaaagagacactcgtcgatgtgtttgcaatttcgatacat 154  Q
    ||||||||||||||||| |||  |||| ||||||||||||||||||    
T  20306539 actaataaaagagacacacgtgaatgtatttgcaatttcgatacat 20306494  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 38709423 - 38709371
Alignment:
Q  109 actaataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaagaa 161  Q
    |||||||||||||| ||| ||  || |||||||||||||||| ||||||||||    
T  38709423 actaataaaagagatacttgtgaatatgtttgcaatttcgatgcattcaagaa 38709371  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 28438171 - 28438217
Alignment:
Q  51 ggaaaacaagtttgaggactaaattgactacttaaagatagattcga 97  Q
    ||||||||  ||||||||||||||||||||| |||| ||||||||||    
T  28438171 ggaaaacatatttgaggactaaattgactacctaaaaatagattcga 28438217  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 21894051 - 21894100
Alignment:
Q  109 actaataaaagagacactcgtcgatgtgtttgcaatttcgatacattcaa 158  Q
    ||||||||||||||||| |||  |||  ||||||||||||||||||||||    
T  21894051 actaataaaagagacacacgtgaatgcatttgcaatttcgatacattcaa 21894100  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 43461195 - 43461146
Alignment:
Q  106 atgactaataaaagagacactcgtcgatgtgtttgcaatttcgatacatt 155  Q
    |||||||||||| ||||| || || |||||||||||||||| ||||||||    
T  43461195 atgactaataaatgagacgcttgtggatgtgtttgcaattttgatacatt 43461146  T

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