View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_3 (Length: 412)
Name: NF1975_low_3
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 2137533 - 2137154
Alignment:
| Q |
19 |
aatagatagatagatgcatacattaacaattgcatttggatttagagggttgttcctccttgtccttggttccaaatgatgcaaccctcccacccgtttc |
118 |
Q |
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| T |
2137533 |
aatagatagatagatgcatacattaacaattgcatttggatttagagggttgttcctccttgtccttggttccaaatgatgcaaacgtcccacccgtttc |
2137434 |
T |
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| Q |
119 |
attcatggcttgatttaacatgagccttagagcgtgattttggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaact |
218 |
Q |
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| T |
2137433 |
attcatggcttgatttaacacgagccttagagcgtgattttggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaact |
2137334 |
T |
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| Q |
219 |
ggttctattagtgatcaatgatgctgccggtagtttacggctctataaaataaagttgttattgcatttactattaaatcaagctttacatagtgcattg |
318 |
Q |
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| T |
2137333 |
ggttctattagtgatcaatgatgctgcgggtagtttacggctctataaaataaaattgttattgcatttactattaaatcaagctttacatagtgcattg |
2137234 |
T |
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| Q |
319 |
aatcatgtttcagcaaatgtaatacaaccctaagaataacactaattaggattttcgttattttcttctattagtataat |
398 |
Q |
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| T |
2137233 |
aatcatggttcagcaaatgtaacacaaccctgagaataacactaattaggattttcggtattttcttctattagtataat |
2137154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 2128193 - 2128017
Alignment:
| Q |
60 |
ttagagggttgttcctccttgtccttggttccaaatgatgcaaccctcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgatttt |
159 |
Q |
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| T |
2128193 |
ttagagggttgttcctccttatccttggttccaaatgatgcaaacgtcccacccgtttcattcatggcttgatttaacacgagccttagagcgtgatttt |
2128094 |
T |
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| Q |
160 |
ggaccttctgtgtatgagtgccttagagaaagctatgttgtttaagcttcaccaaaactggttctattagtgatcaa |
236 |
Q |
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| T |
2128093 |
ggaccttctttgtatgagtgccctagagaaagctatgttgtttaagcttcaccaaaactgattctattagtgatcaa |
2128017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 2081176 - 2081273
Alignment:
| Q |
81 |
tccttggttccaaatgatgcaaccc-tcccacccgtttcattcatggcttgatttaacatgagccttagagcgtgattttggaccttctgtgtatgag |
177 |
Q |
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| T |
2081176 |
tccttggttccaaatgatgcaaaatgtcccacccatttcattaacagcgtgattttacacgagcgttagagcttgattttggaccttctgtgtatgag |
2081273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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