View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_5 (Length: 404)
Name: NF1975_low_5
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_5 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 40888167 - 40888554
Alignment:
| Q |
1 |
cacattatgaccaacttaatttcattcttagtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888167 |
cacattatgaccaacttaatttcattcttagtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatctg |
40888266 |
T |
|
| Q |
101 |
gaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccaaaataacacttgtggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888267 |
gaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccaaaataacacttgtggtta |
40888366 |
T |
|
| Q |
201 |
ttttcttactacggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtca |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888367 |
ttttcttactatggtgtttgcttcttgttatttgttttccagctgagtattgtctatcgttggttcgtgttgggggaatgtttattgctgccaagggtca |
40888466 |
T |
|
| Q |
301 |
tgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttagtgatgcttca |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40888467 |
tgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttaatgatgcttca |
40888554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 44139398 - 44139784
Alignment:
| Q |
1 |
cacattatgaccaacttaatttcattcttagtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatctg |
100 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139398 |
cacattatgaccaacttaatttcattcc-agtcccttcaaattccaacagaaggatgcatttgattaaaaccttgaaattcgaggtaccatgttgatctg |
44139496 |
T |
|
| Q |
101 |
gaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccaaaataacacttgtggtta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44139497 |
gaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactcctttacttccataataacacttgtggtta |
44139596 |
T |
|
| Q |
201 |
ttttcttactacggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtca |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44139597 |
ttttcttactatggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtca |
44139696 |
T |
|
| Q |
301 |
tgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttagtgatgcttca |
388 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44139697 |
tgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgctggtatttactatttattgatgcttca |
44139784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 47892652 - 47892582
Alignment:
| Q |
99 |
tggaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttac |
169 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||||||| |||||| || |||||||||||| |
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| T |
47892652 |
tggaatatcgataatgtgagggattagattggtacaatcctacaatttcaaggaccaaattgagtatttac |
47892582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 44152681 - 44152575
Alignment:
| Q |
213 |
ggtgtttgcttcttgttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggt |
312 |
Q |
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||||||||||||||||||| | |||| ||||| |||||||| |||||||| |||||| || ||||||||||||| |||||| ||||| |||||| |
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|
| T |
44152681 |
ggtgtttgcttcttgttatatcttttacagcttagtattgttgtccgttggtatatgttggcgggttgtttattgctgctgagggtcgtgatcatgaggt |
44152582 |
T |
|
| Q |
313 |
atgtaac |
319 |
Q |
| |
|
||||||| |
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|
| T |
44152581 |
atgtaac |
44152575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 51547876 - 51547808
Alignment:
| Q |
103 |
atatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactc |
171 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | ||| |||| |||||| | ||||||||||||||| |
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|
| T |
51547876 |
atatcgataatgtgagggactacattgacacaatactataatttcaaggaccactttgagtatttactc |
51547808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 27970073 - 27970139
Alignment:
| Q |
101 |
gaatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtattt |
167 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||| || ||| |||||||| |||| |
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| T |
27970073 |
gaatatcaataatgtgagggactagattgatacaatcctacaattttagtgaccaatttgagcattt |
27970139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 12241394 - 12241351
Alignment:
| Q |
102 |
aatatcgataatgtgagggactagattgatacagtcctacaatt |
145 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
12241394 |
aatatcgataatgtgagggactacattgatacagccctacaatt |
12241351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 33181 - 33227
Alignment:
| Q |
99 |
tggaatatcgataatgtgagggactagattgatacagtcctacaatt |
145 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
33181 |
tggaatatcgataatgtgaaagactagatttatacagtcctacaatt |
33227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 5361168 - 5361094
Alignment:
| Q |
102 |
aatatcgataatgtgagggactagattgatacagtcctacaattctaaggactaatttgagtatttactccttta |
176 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| || ||||||| | | ||| ||||||||||| ||||| |||| |
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| T |
5361168 |
aatatcgataatatgagggactggattgatacaatcttacaattttgatgaccaatttgagtatgtactcattta |
5361094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 2371781 - 2371738
Alignment:
| Q |
99 |
tggaatatcgataatgtgagggactagattgatacagtcctaca |
142 |
Q |
| |
|
||||||||| || |||| |||||||||||||||||||||||||| |
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|
| T |
2371781 |
tggaatatccattatgttagggactagattgatacagtcctaca |
2371738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 21873712 - 21873761
Alignment:
| Q |
109 |
ataatgtgagggactagattgatacagtcctacaattctaaggactaatt |
158 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
21873712 |
ataatgtgagagactagattgatacaaacctacaatttcaaggactaatt |
21873761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 17775940 - 17775894
Alignment:
| Q |
99 |
tggaatatcgataatgtgagggactagattgatacagtcctacaatt |
145 |
Q |
| |
|
|||| |||| |||||||||||| |||||| ||||||||||||||||| |
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| T |
17775940 |
tggagtatcaataatgtgaggggctagatcgatacagtcctacaatt |
17775894 |
T |
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