View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1975_low_7 (Length: 371)
Name: NF1975_low_7
Description: NF1975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1975_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 10556220 - 10555878
Alignment:
| Q |
13 |
aatatccacacgtcttacagcaaacaaacagtgcacacttaccaataaaaaatagtggaatcataaggcaatatttaaggataat--------tcaccgg |
104 |
Q |
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| T |
10556220 |
aatatccacacgtcttacggcaaaca----gtgcacacttaccaataaaaaatagtggaatcataagacgatatttaaggataatatgataattcaccgg |
10556125 |
T |
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| Q |
105 |
tgatatatattaacctaactcataaggctattatgaacagatatatctaagagagaattaagcatcccannnnnnnctttctgtaaaattagattagata |
204 |
Q |
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| T |
10556124 |
tgacatatattgacctaactccttaggctattttgaacagatatattt--gagagaattaagcatcccatttttttctttctgtaaaattagattagata |
10556027 |
T |
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| Q |
205 |
tagctgaatcggtatgggacacgtttgaaaaggatggatgagtttatgagcaaaatgggatgaaatcagacaagaaaaagacaacaacatgaaagataag |
304 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10556026 |
tagctgaatcggtatgggacacatttgaaaaggatggatgagtttatgagcaaaatgggatgaaatcagacaagaaaaagacaacaacatgaaagataag |
10555927 |
T |
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| Q |
305 |
acgaggctctattaaattttgtgccctccttgggatgtgtggtcagtta |
353 |
Q |
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| T |
10555926 |
aggaggctctattaaattttgtgccctccttgggatgtgtggtcagtta |
10555878 |
T |
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