View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19760_high_1 (Length: 313)

Name: NF19760_high_1
Description: NF19760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19760_high_1
NF19760_high_1
[»] chr5 (16 HSPs)
chr5 (22-294)||(37412787-37413059)
chr5 (62-298)||(37824248-37824504)
chr5 (211-298)||(37640225-37640312)
chr5 (62-180)||(37400363-37400481)
chr5 (211-298)||(37400532-37400619)
chr5 (211-298)||(37436060-37436147)
chr5 (211-298)||(37533453-37533540)
chr5 (211-298)||(37711977-37712064)
chr5 (98-180)||(37429223-37429305)
chr5 (62-180)||(37697278-37697396)
chr5 (81-180)||(37436198-37436297)
chr5 (211-298)||(37703021-37703108)
chr5 (211-280)||(37594695-37594764)
chr5 (81-180)||(37533591-37533690)
chr5 (81-180)||(37712115-37712214)
chr5 (88-180)||(37640363-37640455)
[»] chr3 (1 HSPs)
chr3 (184-298)||(14553463-14553577)
[»] chr4 (1 HSPs)
chr4 (209-289)||(24217458-24217538)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 294
Target Start/End: Original strand, 37412787 - 37413059
Alignment:
Q  22 ctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412787 ctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattg 37412886  T
Q  122 ttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaatatccaaaattgagtattgtggatttaaataataacatgtta 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37412887 ttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaatatccaaaattgagtattgtggatttaaataataaaatgtta 37412986  T
Q  222 gatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctca 294  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412987 aatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctca 37413059  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 298
Target Start/End: Complemental strand, 37824504 - 37824248
Alignment:
Q  62 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 161  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||||||||| ||||||||| ||    
T  37824504 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatcta 37824405  T
Q  162 ataaattagttggcccaat----------atc----------caaaattgagtattgtggatttaaataataacatgttagatggaacaaatcctcattg 241  Q
    | ||| |||||||||||||          |||          ||||||||||||||||||||||||    |||||||||| ||||||||| ||| |||||    
T  37824404 acaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctttaacatgttaaatggaacaattccacattg 37824305  T
Q  242 gtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    |||||||| ||||  ||| || |||||||||  |||||| |||||||||||||||||    
T  37824304 gtgttattctttgccttcgttgttagagttgggcctcagcgacaaccacctcacagg 37824248  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 37640312 - 37640225
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||||||||||||||||||| | ||||||||    
T  37640312 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 37400363 - 37400481
Alignment:
Q  62 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 161  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||||||| ||    
T  37400363 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatcta 37400462  T
Q  162 ataaattagttggcccaat 180  Q
    | ||| |||||||||||||    
T  37400463 acaaactagttggcccaat 37400481  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 37400532 - 37400619
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||||||||||||  ||||| | ||||||||    
T  37400532 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagcaacaacaatctcacagg 37400619  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 37436147 - 37436060
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    ||||||||||| ||||||||| ||| || |||||||||||||||  ||| || |||||||||||||||  | ||||||| ||||||||    
T  37436147 ataacatgttaaatggaacaattccacagtggtgttattatttgccttcattgttagagttgtacctccattacaaccatctcacagg 37436060  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 37533540 - 37533453
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||||||  |||||||  ||||||||||||||||    
T  37533540 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttacacctcagcaacaaccacctcacagg 37533453  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 37712064 - 37711977
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    ||||||||||| ||||||||| ||| || |||||||||| ||||  ||| || |||||||||  |||||| |||||||||||||||||    
T  37712064 ataacatgttaaatggaacaattccacagtggtgttattctttgccttcattgttagagttgggcctcagcgacaaccacctcacagg 37711977  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 37429305 - 37429223
Alignment:
Q  98 acaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 180  Q
    ||||| ||| |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37429305 acaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 37429223  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 37697396 - 37697278
Alignment:
Q  62 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 161  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| | || |||||| |||||| |||||||||||    
T  37697396 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcattta 37697297  T
Q  162 ataaattagttggcccaat 180  Q
    | ||| ||||||| |||||    
T  37697296 acaaactagttgggccaat 37697278  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 37436297 - 37436198
Alignment:
Q  81 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 180  Q
    ||||||| |||| | | ||||| ||| |||| |||||| | || |||||| | || |||||| ||||||||||||||||||| ||| |||||||||||||    
T  37436297 tttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaat 37436198  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 37703108 - 37703021
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 298  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||| ||||  |||| | |||||||||||||||||    
T  37703108 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagggttggtcctcggcgacaaccacctcacagg 37703021  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 37594764 - 37594695
Alignment:
Q  211 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcag 280  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||| |||||||||||    
T  37594764 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagaattgtacctcag 37594695  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 37533690 - 37533591
Alignment:
Q  81 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 180  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| ||||||  ||||| |||||||| ||| ||| ||||||| |||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat 37533591  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 180
Target Start/End: Complemental strand, 37712214 - 37712115
Alignment:
Q  81 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 180  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||  ||| ||| |||||||||||||    
T  37712214 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagttggcccaat 37712115  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 37640455 - 37640363
Alignment:
Q  88 taacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 180  Q
    ||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||| ||| ||| |||||||||||||    
T  37640455 taacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaat 37640363  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 14553577 - 14553463
Alignment:
Q  184 caaaattgagtattgtggatttaaataataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtga 283  Q
    ||||||||||   ||||||||||| | ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||| | |||||| ||    
T  14553577 caaaattgagctatgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcga 14553478  T
Q  284 caaccacctcacagg 298  Q
    |||||||||||||||    
T  14553477 caaccacctcacagg 14553463  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 289
Target Start/End: Original strand, 24217458 - 24217538
Alignment:
Q  209 taataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaacca 289  Q
    ||||||||||||| ||||||||| ||| || ||||||||||  |||  ||| || ||||||||| | || |||||||||||    
T  24217458 taataacatgttaaatggaacaattccgcaatggtgttattccttgccttcgttgttagagttggatcttagtgacaacca 24217538  T

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