View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19760_high_2 (Length: 363)

Name: NF19760_high_2
Description: NF19760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19760_high_2
NF19760_high_2
[»] chr4 (1 HSPs)
chr4 (5-363)||(52126999-52127357)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 363
Target Start/End: Original strand, 52126999 - 52127357
Alignment:
Q  5 agcagcaccacagagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaag 104  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52126999 agcaacacaacacagccagtcccacatcttgacttttggtactataatctcacccgattcgtattcatgaaacaatctcattatttcggtgtttcccaag 52127098  T
Q  105 aaaccctccaattcatttcaatttccgcttaattcaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctact 204  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127099 aaaccctccaattcatttcaatttccgcttaatccaaacgcgcttaattcttcttcgaatctctgcacaaacaaatggtttcgtacatgaacattctact 52127198  T
Q  205 ctacggcgtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127199 ctacggcgtcggaggcttagtcgtcgccggcatggcattgctcgtcgcgtttcaggagaagcttgtttacgttccggtcttaccaggtctcaccaaatcc 52127298  T
Q  305 tacgctatcactccttctcgtctcagactcacctatgaagatatctggctttcttcttc 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127299 tacgctatcactccttctcgtctcagactcacctatgaagatatctggctttcttcttc 52127357  T

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