View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19760_low_4 (Length: 258)
Name: NF19760_low_4
Description: NF19760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19760_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 54718617 - 54718870
Alignment:
| Q |
5 |
agaacctgtggaggctgaaaatggtgaggttgagcgacaccgtggagagatccggagaaaccgttgaagagagcttgaacggaagcgtcaccagcagcct |
104 |
Q |
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| T |
54718617 |
agaacctgtggaggttgaaaatggtgaggttgagcgacaccgtggagagatccggagaaaccgttgaagagagcttgaacggaagcatcaccagcagcct |
54718716 |
T |
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| Q |
105 |
gtaaaagctaacaatattaaaatattcggtaataaaaacgataaagttgttaattaataaacggagtgagaaaatatgaatatactcacggaggaggtgt |
204 |
Q |
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| T |
54718717 |
gtaaaagctaacaatattaaaatattcagtaataaaaacgataaagttgttaattaataaacggagtgagaaaatatgaatatactcacggaggaggtgt |
54718816 |
T |
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| Q |
205 |
taacgacgtcgttttgggaggagtcaaagtcagcaggcatgtggaggagacctc |
258 |
Q |
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| T |
54718817 |
taacgacgtcgttttgggaggagtcaaagtcagcaggcatgtggaggagacctc |
54718870 |
T |
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