View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_14 (Length: 403)
Name: NF19762_high_14
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_14 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Complemental strand, 2181401 - 2181021
Alignment:
| Q |
4 |
ttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagttatattaaga |
103 |
Q |
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| T |
2181401 |
ttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagttatattaaga |
2181302 |
T |
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| Q |
104 |
tgtggttacaaattggattttatgtggcaatatggagttttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactctatt |
203 |
Q |
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| T |
2181301 |
tgtggttacaaattggattt-atgtggcaatatggagttttcattgaatgtcaatgtaaaactaatttacgccgatagtgtatcaccattaaactctatt |
2181203 |
T |
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| Q |
204 |
ttgaaatggcataaggatgactaactttctctcgagatggctgaatagcatctgaagcgattcaactattagtattatacaaaactgatccatataaatg |
303 |
Q |
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| T |
2181202 |
ttgaaatggcataaggatgactaactttctctcgaggtggctgaatagcatctgaagcgattcaactattagtattatacaaaactgatccatataaatg |
2181103 |
T |
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| Q |
304 |
ttgttgaattttcttttattattaaaaatcattaataagtcaaaataaaagaacatgaaaagtaaacttacaactgaaatgc |
385 |
Q |
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| T |
2181102 |
ttgttgaattttcttttattattaaaaatcattaataagtcaaaataaaagaacatgaaaagtaaacttacaactgaaatgc |
2181021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2181475 - 2181402
Alignment:
| Q |
1 |
ctcttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatga |
74 |
Q |
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| T |
2181475 |
ctcttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatga |
2181402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 15199665 - 15199725
Alignment:
| Q |
139 |
agttttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactc |
199 |
Q |
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| T |
15199665 |
agttttcattgtatgtcaatgtaaaactaatttacatagacagtgcatctccattaaactc |
15199725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 191809 - 191851
Alignment:
| Q |
141 |
ttttcattgaatgtcaatgtaaaactaatttacaccgatagtg |
183 |
Q |
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| T |
191809 |
ttttcattgaatgtcaatgtaaaactattttacaccaatagtg |
191851 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 9321570 - 9321611
Alignment:
| Q |
158 |
tgtaaaactaatttacaccgatagtgtatcaccattaaactc |
199 |
Q |
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| T |
9321570 |
tgtaaaactaatttacaccgacagtgcatcaccattaaactc |
9321611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 5431769 - 5431720
Alignment:
| Q |
151 |
atgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactct |
200 |
Q |
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| T |
5431769 |
atgtcagtgtaaaactaatttacaccgacagtgtatgactattaaactct |
5431720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 18901503 - 18901559
Alignment:
| Q |
32 |
atgcactgtcattgtagactaattttacactgacaactaatgagaattcaatatttt |
88 |
Q |
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| T |
18901503 |
atgcactgtcagtgtaaactaattttacattgacatctaatgagaatccagtatttt |
18901559 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 18358505 - 18358408
Alignment:
| Q |
39 |
gtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagtt-atattaagatgtggttacaaattggattttatgtggcaatat |
136 |
Q |
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| T |
18358505 |
gtcagtgtaaactaattttacactgacgtccaatgagaatcaagtatgttgcagttaattttaaaatgtggttacaaagtgga-tttatgtggcgatat |
18358408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 1811945 - 1812002
Alignment:
| Q |
142 |
tttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactc |
199 |
Q |
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| T |
1811945 |
tttcattggatgtcagtgtaaaactaatatgcagcgacagtgcatcaccattaaactc |
1812002 |
T |
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