View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_18 (Length: 349)
Name: NF19762_high_18
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 26437051 - 26436733
Alignment:
| Q |
18 |
ttgcacgcttcaggtagcagctcagttccatctctttaaagggctaaacatgtctcttcaactatgaaacaataacacaagcaccggcacaacacgcaca |
117 |
Q |
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| T |
26437051 |
ttgcacgcttcagctagcaactcagtttcatctctttaaagggctaaacatgtctcttcaactatgaaacaataacacaagcaccggcacaacacacaca |
26436952 |
T |
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| Q |
118 |
cttcaacacaacatcgattgtaatttnnnnnnntgacataattgaacacaatcacatgccaataccaccaaacaccaacctcaccttcaagcaaaagtgt |
217 |
Q |
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| T |
26436951 |
cttcgacacaacatcgattgtaatttaaaaaaatgacataattgaacacaatcacatgccaatacca---aacaccaacctcaccttcaagcaaaagtgt |
26436855 |
T |
|
| Q |
218 |
atgctacaaaggccatcaatgtttaaaaggagaaaagtggtcaagtataaaacataaacttgcacagttataccaaacaaatatttttgaaatctaatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26436854 |
atgctacaaaggccatcaatgtttaaaaggagaatagtggtcaagtataaaacataaacttgcacagttataccaaataaatatttttgaaatctaatat |
26436755 |
T |
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| Q |
318 |
tattaattctaccattttcttc |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
26436754 |
tattaattctaccattttcttc |
26436733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 31633328 - 31633269
Alignment:
| Q |
263 |
tataaaacataaacttgcacagttataccaaacaaatatttttgaaatctaatattatta |
322 |
Q |
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||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||| |
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| T |
31633328 |
tataaaacatatacttgcccagttataccaaacaaatacttttgaaatcccatattatta |
31633269 |
T |
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