View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_high_19 (Length: 349)

Name: NF19762_high_19
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_high_19
NF19762_high_19
[»] chr3 (4 HSPs)
chr3 (17-338)||(48710115-48710436)
chr3 (269-313)||(48706759-48706803)
chr3 (17-59)||(48698929-48698971)
chr3 (142-205)||(1810011-1810074)
[»] chr6 (2 HSPs)
chr6 (157-205)||(733165-733213)
chr6 (141-200)||(9027617-9027676)
[»] chr1 (3 HSPs)
chr1 (142-201)||(24502801-24502860)
chr1 (92-224)||(4868415-4868547)
chr1 (161-209)||(34278685-34278733)
[»] chr8 (2 HSPs)
chr8 (92-193)||(4560548-4560650)
chr8 (157-201)||(25869254-25869298)
[»] chr7 (1 HSPs)
chr7 (172-205)||(4001743-4001776)
[»] chr4 (2 HSPs)
chr4 (161-209)||(46201378-46201426)
chr4 (91-130)||(46860027-46860067)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 48710436 - 48710115
Alignment:
Q  17 catcaagctcctaattattgtattgattcaagattaattttatataacagttccgatagctcatcaagggtcagcttggattgacttatttgaactatct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710436 catcaagctcctaattattgtattgattcaagattaattttatataacagttccgatagctcatcaagggtcagcttggattgacttatttgaactatct 48710337  T
Q  117 attaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctataggctttcgaaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48710336 attaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctataggcttacgaaa 48710237  T
Q  217 atagtttatagcttatatnnnnnnncagtttgattttattttatcnnnnnnnattcaggcttaagctatcattaaatacatgccccactatatctctaca 316  Q
    ||||||||||||||||||       ||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48710236 atagtttatagcttatataaaaaaacagtttgattttattttttatttttttattcaggcttaagctatcattaaatacatgccccactatatctctaca 48710137  T
Q  317 gaactacacatttacatttcat 338  Q
    ||||||||||||||||||||||    
T  48710136 gaactacacatttacatttcat 48710115  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 48706803 - 48706759
Alignment:
Q  269 attcaggcttaagctatcattaaatacatgccccactatatctct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  48706803 attcaggcttaagctatcattaaatacatgccccactatatctct 48706759  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 48698971 - 48698929
Alignment:
Q  17 catcaagctcctaattattgtattgattcaagattaattttat 59  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  48698971 catcaagctcctaataattgtattgattcaagattaatattat 48698929  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 1810074 - 1810011
Alignment:
Q  142 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttctata 205  Q
    ||||||| |||||||||||| ||||||| ||||||| ||  ||||||||| || ||||||||||    
T  1810074 tttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgcttatttctata 1810011  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 733165 - 733213
Alignment:
Q  157 ggaaataacttattacatgtcaatatgttgttttcagcatatttctata 205  Q
    ||||||||||||| ||||||| | | |||||||||||||||||||||||    
T  733165 ggaaataacttatgacatgtccacaagttgttttcagcatatttctata 733213  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 9027676 - 9027617
Alignment:
Q  141 gtttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatattt 200  Q
    |||||| | |||||| ||||||||||||| ||||||| ||| |||||||||||| |||||    
T  9027676 gtttgaaagagcttatggaaataacttatgacatgtccataagttgttttcagcttattt 9027617  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 24502801 - 24502860
Alignment:
Q  142 tttgagacagcttacggaaataacttattacatgtcaatatgttgttttcagcatatttc 201  Q
    ||||||| ||||||| |||| ||||||| |||||||||||  ||||||||||| ||||||    
T  24502801 tttgagagagcttacagaaacaacttatgacatgtcaataatttgttttcagcttatttc 24502860  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 224
Target Start/End: Complemental strand, 4868547 - 4868415
Alignment:
Q  92 ttggattgacttatttgaact-atctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgtttt 190  Q
    ||||||||| ||||||||| | ||||||| ||||| |||| ||  |||  |||||||| || ||| | ||| ||||||| ||||||||||| ||||||||    
T  4868547 ttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgtttt 4868449  T
Q  191 cagcatatttctataggctttcgaaaatagttta 224  Q
    || | |||||  ||| |||||  |||||||||||    
T  4868448 caacttatttacataagcttttcaaaatagttta 4868415  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 34278685 - 34278733
Alignment:
Q  161 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 209  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  34278685 ataacttatgacatgttcataggttgttttcagcttatttctataggct 34278733  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 4560650 - 4560548
Alignment:
Q  92 ttggattgacttatttgaact-atctattaacataagcacatgacagatggtttgagacagcttacggaaataacttattacatgtcaatatgttgtttt 190  Q
    |||||||||||||||||| || ||||||| |||||||||| ||  || | |||||  | | |||| ||||||||||||| |||||||| || | ||||||    
T  4560650 ttggattgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaataacttataacatgtcagtaagctgtttt 4560551  T
Q  191 cag 193  Q
    |||    
T  4560550 cag 4560548  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 25869254 - 25869298
Alignment:
Q  157 ggaaataacttattacatgtcaatatgttgttttcagcatatttc 201  Q
    ||||||||||||| ||||||| ||| |||||||||||| ||||||    
T  25869254 ggaaataacttatgacatgtccataagttgttttcagcttatttc 25869298  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 4001776 - 4001743
Alignment:
Q  172 catgtcaatatgttgttttcagcatatttctata 205  Q
    |||||||||| |||||||||||||||||||||||    
T  4001776 catgtcaataagttgttttcagcatatttctata 4001743  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 46201426 - 46201378
Alignment:
Q  161 ataacttattacatgtcaatatgttgttttcagcatatttctataggct 209  Q
    ||||||||| ||||||  ||| |||||||||||| ||||||||||||||    
T  46201426 ataacttatgacatgttcataggttgttttcagcttatttctataggct 46201378  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 46860067 - 46860027
Alignment:
Q  91 cttggattgacttatttgaac-tatctattaacataagcac 130  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  46860067 cttggattgacttatttgaacttatctattcacataagcac 46860027  T

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