View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19762_high_25 (Length: 309)
Name: NF19762_high_25
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 35425839 - 35426126
Alignment:
| Q |
8 |
aagcaaaggacattgtatttgcaagaaaacagatgtggagacctggtcctccttttgtcagagaatgtcagcatttagcaagcattcagtcttcattatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35425839 |
aagcaaaggacattgtatttgcaagaaaacagatgtggagacctggtcctccttttgtcagagaatgtcaacatttagcaagcattcagtcttcattatg |
35425938 |
T |
|
| Q |
108 |
cagaacaatttaactttctagacaagattaaagatgtgcatcattgtatgtataacatcaagacaagattagaaatcaaattttaaattct-nnnnnnnn |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35425939 |
cagaacaatttaactttctagacaagattaaagatgtgcatcattgtatgtataacatcaagacaagattagaaatcaaattttaaattctaaaaaaaaa |
35426038 |
T |
|
| Q |
207 |
nnntcagagaaactacaatattttcaatgtagag-agatgtaaaacattagacaaccaatccaaattaaaattagatcatgcatgcga |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426039 |
aaatcagagaaactacaatattttcaatgtagagaagatgtaaaacattagacaaccaatccaaattaaaattagatcatgcatgcga |
35426126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University