View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19762_high_3 (Length: 762)

Name: NF19762_high_3
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19762_high_3
NF19762_high_3
[»] chr7 (2 HSPs)
chr7 (183-293)||(28134478-28134588)
chr7 (109-147)||(28134070-28134108)
[»] chr6 (2 HSPs)
chr6 (170-307)||(6990639-6990773)
chr6 (320-407)||(6990373-6990460)
[»] chr2 (1 HSPs)
chr2 (592-735)||(691511-691655)
[»] chr3 (1 HSPs)
chr3 (324-407)||(3758460-3758543)
[»] chr5 (1 HSPs)
chr5 (424-729)||(36199530-36199847)
[»] chr8 (1 HSPs)
chr8 (204-280)||(13261556-13261632)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 28134478 - 28134588
Alignment:
Q  183 gctgatccgcagttgatgagagggaagattgtgctgttggagttgttgaaaatttggttagtgaatgctggagctgttttcagaactagtgaaaggtaga 282  Q
    |||||||| |||| |||||||||||||||||||  |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  28134478 gctgatccacagtcgatgagagggaagattgtggcgttggagttgttgaaaattttgttggagaatgctggagctgttttcagaactagtgaaaggtaga 28134577  T
Q  283 gtgtaccttct 293  Q
    |||||||||||    
T  28134578 gtgtaccttct 28134588  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 28134070 - 28134108
Alignment:
Q  109 gtggagaaatatgatgttgatagctctatgccagtgttt 147  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  28134070 gtggagaaatctgatgttgatagctctatgacagtgttt 28134108  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 170 - 307
Target Start/End: Complemental strand, 6990773 - 6990639
Alignment:
Q  170 tatgccggagaatgctgatccgcagttgatgagagggaagattgtgctgttggagttgttgaaaatttggttagtgaatgctggagctgttttcagaact 269  Q
    |||||||||||||| ||||  ||||| ||||||||||||||| |||   |||||| |||||||||||| ||| | ||||| |||||||||||||||||||    
T  6990773 tatgccggagaatgttgatatgcagtcgatgagagggaagatggtg---ttggagctgttgaaaattttgttggagaatgttggagctgttttcagaact 6990677  T
Q  270 agtgaaaggtagagtgtaccttctgtaatgatatactc 307  Q
    ||||||||||||||| | ||||||||| ||||||||||    
T  6990676 agtgaaaggtagagtatgccttctgtattgatatactc 6990639  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 320 - 407
Target Start/End: Complemental strand, 6990460 - 6990373
Alignment:
Q  320 tgcagataatgaaactttcataattgttgacaggttgaattttcaagtttggagacattgaaacttttcctcatcaatgtccagagga 407  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||| |||||| |   ||||| ||||||||||    
T  6990460 tgcagataatgaaactttcataactattgacaggttgaatttccaagtttggaggcattgcaactttcctgaatcaaagtccagagga 6990373  T

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Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 735
Target Start/End: Complemental strand, 691655 - 691511
Alignment:
Q  592 agaatatgtaaaatactttttaaatttgtttgtgagtccttgttgtatattcttgtttttt-gcgtgcgtgcggtttaattaagagcaaagtggagtttt 690  Q
    |||||||||||||||||||| || ||||||||||   |||||   |||||||||||||||| || || |||  ||||||| ||||| ||| |||| || |    
T  691655 agaatatgtaaaatacttttcaattttgtttgtggtaccttgcattatattcttgtttttttgcatgtgtgtagtttaatcaagagtaaaatggatttct 691556  T
Q  691 gtatggttgtgctttccttataatgctttttgctccaactgtgtt 735  Q
     ||||||||| |||||||||||||||| | |||||||||||||||    
T  691555 atatggttgtcctttccttataatgctctctgctccaactgtgtt 691511  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 324 - 407
Target Start/End: Complemental strand, 3758543 - 3758460
Alignment:
Q  324 gataatgaaactttcataattgttgacaggttgaattttcaagtttggagacattgaaacttttcctcatcaatgtccagagga 407  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |   |||||||| |||||||    
T  3758543 gataatgaaactttcataactgttgacaggttgaatttccaagtttggagacattgaagctttactcaatcaatgtacagagga 3758460  T

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Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 424 - 729
Target Start/End: Original strand, 36199530 - 36199847
Alignment:
Q  424 ttattgataaaatataagatgt--gtaagtagtagctctctttcatatccgttgttagtttcattagcttctaccataaaattgttgagtttgatggttt 521  Q
    |||||||||| ||||||||| |  ||||||||||| | |||||||| |||||||||    || | || |||||||||||||||||||| |||||||||||    
T  36199530 ttattgataacatataagatatatgtaagtagtagttttctttcatgtccgttgtt----tcgtaagtttctaccataaaattgttgaatttgatggttt 36199625  T
Q  522 gaactatgaaggtcattgacaaggt--ttatttatttat---ttactttgacagtcaattt-------gagttgatgaagtaagaatatgtaaaatactt 609  Q
    || |||||||  |||| ||||| ||  |||  || ||||     |||||||  ||||||||       ||||| || || |||||||||||||||||||     
T  36199626 gagctatgaatatcatagacaatgtaatta-ctacttatgcaaaactttgatggtcaatttcaacacagagttaatcaaataagaatatgtaaaatactc 36199724  T
Q  610 tttaaatttgtttgtgagtccttgttgtatattc-ttgttttttgcgtgc----gtgcggtttaattaagagcaaagtggagttttgtatggttgtgctt 704  Q
    || || ||||||  |||||| ||||||||||||| || ||||||| ||||    |||  ||||||||||||| ||| || |||| |||||||||||||||    
T  36199725 ttcaattttgtt--tgagtcattgttgtatattctttcttttttgtgtgcatgtgtgtagtttaattaagaggaaaatgaagttatgtatggttgtgctt 36199822  T
Q  705 tccttataatgctttttgctccaac 729  Q
    | ||||||||||| | |||||||||    
T  36199823 tacttataatgctatctgctccaac 36199847  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 13261632 - 13261556
Alignment:
Q  204 gggaagattgtgctgttggagttgttgaaaatttggttagtgaatgctggagctgttttcagaactagtgaaaggta 280  Q
    ||||||||||||   || ||||||||||| |||| | | | |||||||||||||||||||||||| ||||| |||||    
T  13261632 gggaagattgtggctttagagttgttgaagattttgctggagaatgctggagctgttttcagaaccagtgacaggta 13261556  T

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