View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19762_high_31 (Length: 267)
Name: NF19762_high_31
Description: NF19762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19762_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 4846359 - 4846617
Alignment:
| Q |
1 |
cttcttcatcgctataacctaatctgttaatccattattccgttttcaacaatgttaagtcacatgttacctacattagtactgaaataagttatattag |
100 |
Q |
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| T |
4846359 |
cttcttcatcgctataacctaatctgttaatccattattccgttgtcaacaatgttaaggcacatgttacctacattagtactgaaataagttttattag |
4846458 |
T |
|
| Q |
101 |
tgtatgtaaggaaacagagtaaaacttatacatcagcnnnnnnnnnnnnntaataaagaagcaattttttgttgaggatatggattatttcaaggctcac |
200 |
Q |
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| T |
4846459 |
tgtatgtaaggaaacagagtaaaacttatacatcagcaaaaataaaaaaataataaagaagcaattttttgttgaggatatggattatttcaaggctcac |
4846558 |
T |
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| Q |
201 |
ttgaaaggagggtttgattttgctcaatcggcagcaacataagagacaatagaataatc |
259 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
4846559 |
ttgaaaggagggtttgattttgctcaataggcagcaacataagagacaatagaagaatc |
4846617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4080345 - 4080069
Alignment:
| Q |
1 |
cttcttcatcgctataacctaatctgttaatccattattccgttttcaacaatgttaagtcacatgttacctacattagtactgaaataagttatattag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4080345 |
cttcttcatcgctataacctaatttgttaatccattattccgttttcaacaatgttaaggcacatgttacctacattagtactgaaataagttatattag |
4080246 |
T |
|
| Q |
101 |
tgtatgtaaggaaacagagtaaaacttatacatcagcnnnnnnnnnnnnntaataaagaagcaattttttgtt------------------gaggatatg |
182 |
Q |
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| T |
4080245 |
tgtatgtaaggaaacagagtaaaacttatacatcagcaaaaataaaaaaataataaagaagcaattttttgttgaggatatggattatttcgaggatatg |
4080146 |
T |
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| Q |
183 |
gattatttcaaggctcacttgaaaggagggtttgattttgctcaatcggcagcaacataagagacaatagaataatc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
4080145 |
gattatttcaaggctcacttgaaaggagggtttgattttgctcaataggcagcaacataagagacaatagaagaatc |
4080069 |
T |
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